Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq503 98.7 9e-16 seq129 86.0 6e-12 >seq503 Length=216272 Score = 98.7 bits (108), Expect = 9e-16 Identities = 149/211 (71%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 131920 ATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTG 131979 ||| | | |||| || ||||| || ||||| || | || ||| |||||| | || Sbjct 160628 ATGCAGGGTTGATTCCTTTTGTATATTGTAATCAGAAAGTGTGCGCCCATCTTCCAATTG 160569 Query 131980 TTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTT 132039 |||||| | | |||| | | |||||| |||||||| || ||||||||||| ||| || Sbjct 160568 TTTACCAGCAAAGATCAACCTCTGTTGGTCTGGAGGAATACCTTCTTTATCTTGAATCTT 160509 Query 132040 TTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGT 132099 | ||||| | || | ||||||| | || ||||| | || | ||||| || || Sbjct 160508 TGCTTTCACGTTCTCAATTGTATCGGAAGCTTCAACTTCAAGGGTGATAGTTTTTCCTGT 160449 Query 132100 CAGAGTTTTTATGAAAATCTGCATGACTTAT 132130 ||| || || | ||| |||||||||| |||| Sbjct 160448 CAGTGTCTTGACGAAGATCTGCATGA-TTAT 160419 Score = 95.1 bits (104), Expect = 1e-14 Identities = 154/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||| | ||| | ||| | ||| | ||||||| |||||||| || |||||| || || Sbjct 162777 ACGAAGGCGAAGAACAAGATGAAGAGTTGACTCCTTTTGAATATTATAGTCGGACAGCGT 162718 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 || || || | |||||||| | |||| | | ||||||||| || || || || Sbjct 162717 GCGACCGTCCTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCGGGTGGAATACC 162658 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||||||||| ||| || || | | ||| | ||| || | | ||||||||| | Sbjct 162657 TTCTTTATCCTGAATCTTGGCCTTGACATTTTCGATAGTGTCTGAAGCCTCCACTTCTAG 162598 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || | |||||| ||||| || ||||||| ||||| ||||| Sbjct 162597 AGTTATCGTTTTCCCAGTAAGGGTTTTTACAAAAATTTGCAT 162556 Score = 86.0 bits (94), Expect = 6e-12 Identities = 139/198 (70%), Gaps = 4/198 (2%) Strand=Plus/Minus Query 131928 TTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGA--ATCTTCGAGCTGTTTACC 131985 |||| || || ||||||||||| || | || || ||| |||||| || |||||||| Sbjct 161076 TTGATTCCTTCTGAATGTTGTAATC--TGATAGTGTGCGTCCATCTTCCAGTTGTTTACC 161019 Query 131986 GGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTT 132045 | | | || | | |||||||||||| || || ||||| ||||| ||||||| ||| Sbjct 161018 CGCAAAAATCAATCTCTGTTGATCTGGCGGAATTCCTTCCTTATCTTGAATTTTTGCTTT 160959 Query 132046 CAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGT 132105 | | ||| | || |||| | || ||||| | || | ||||| || || || || Sbjct 160958 TACATTTTCTATCGTGTCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGTAAGGGT 160899 Query 132106 TTTTATGAAAATCTGCAT 132123 || | |||||| ||||| Sbjct 160898 CTTCACGAAAATTTGCAT 160881 Score = 84.2 bits (92), Expect = 2e-11 Identities = 135/194 (70%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || ||||||||||| || ||||| || || || ||||| | |||||||| | Sbjct 161829 GATTCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCAGCG 161770 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | | |||||||||||| || || ||||||||||| ||| || || | Sbjct 161769 AAGATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTGAATCTTGGCCTTGACA 161710 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | ||| | ||| || | | ||| ||||| | || | |||||| || || || |||||| Sbjct 161709 TTTTCAATAGTGTCTGAAGCCTCAACTTCCAGAGTTATCGTTTTTCCTGTAAGGGTTTTT 161650 Query 132110 ATGAAAATCTGCAT 132123 | ||||| ||||| Sbjct 161649 ACAAAAATTTGCAT 161636 >seq129 Length=1828789 Score = 86.0 bits (94), Expect = 6e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 131934 CTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAATAGA 131993 |||||||||| || || || || ||||| |||||| | || || || | | | | Sbjct 1158785 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1158726 Query 131994 TTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAACTGTT 132053 | ||||| || ||||| || || || ||||||||||| ||||| ||| | | || Sbjct 1158725 TAAGACGTTGCTGATCAGGTGGAATTCCTTCTTTATCCTGGATTTTAGCTTTTACATTTT 1158666 Query 132054 CCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTATGA 132113 | | |||||| | | || ||||| | || | ||||||||||||| |||||| | | Sbjct 1158665 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1158606 Query 132114 AAATCTGCAT 132123 | |||||||| Sbjct 1158605 ATATCTGCAT 1158596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 476578081479240