Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq739 111 1e-19 seq503 102 7e-17 seq129 96.9 3e-15 seq418 93.3 4e-14 seq2682 82.4 7e-11 >seq739 Length=1399493 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | |||||||||||| | || |||||| | || || | ||||| ||||| Sbjct 7032 ATGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATTACCTTGGAAGTTGAAGCATCT 7091 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || |||||| || ||||||||||| || || || ||| Sbjct 7092 GACACAATAGAGAATGTTAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCAG 7151 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | || | | ||||||||||| ||||||| |||| | | ||||| || Sbjct 7152 CAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 7211 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||| ||||| ||||| | |||||||| || ||| | | ||||||| Sbjct 7212 ATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGAA 7260 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | |||||||||||| | || |||||| | ||||| | ||||| ||||| Sbjct 7974 ATGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATCACCTTGGAAGTTGAAGCATCT 8033 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || |||||| || ||||||||||| || || || ||| Sbjct 8034 GACACAATAGAGAATGTTAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCAG 8093 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | || | | |||||||| || ||||||| |||| | | ||||| || Sbjct 8094 CAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTTTCAGATTATAAC 8153 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || ||||| ||||| | |||||||| || ||| | | ||||||| Sbjct 8154 ATCCAGAAAGAGTCCACACTCCATTTAGTATTGAGACTTCGTGGAGGAA 8202 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| |||||| | || || ||| | || || | ||||| ||||| Sbjct 7260 ATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTCT 7319 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || || || || ||||||||||| || || || ||| Sbjct 7320 GACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAG 7379 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | || | | ||||||||||| ||||||| |||| | | ||||| || Sbjct 7380 CAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 7439 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||| ||||| ||||| | |||||||| || ||| | | ||||||| Sbjct 7440 ATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGAA 7488 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| |||||| | || || ||| | || || | ||||| ||||| Sbjct 7488 ATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTCT 7547 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || || || || ||||||||||| || || || ||| Sbjct 7548 GACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAG 7607 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | || | | ||||||||||| ||||||| |||| | | ||||| || Sbjct 7608 CAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 7667 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || ||||| ||||| | |||||||| || ||| | | ||||||| Sbjct 7668 ATCCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGAA 7716 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| |||||| | || || ||| | || || | ||||| ||||| Sbjct 7716 ATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTCT 7775 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || || || ||| | || || || || || ||||||||||| || || || ||| Sbjct 7776 GACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCAG 7835 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || | | || | | ||||||||||| ||||||| |||| | | ||||| || Sbjct 7836 CAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAAC 7895 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || ||||| ||||| | |||||||| || ||| | | ||||||| Sbjct 7896 ATCCAGAAAGAGTCCACACTCCATTTAGTATTGAGACTTCGTGGAGGAA 7944 >seq503 Length=216272 Score = 102 bits (112), Expect = 7e-17 Identities = 160/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || |||||| | ||||| | ||||| ||||| | Sbjct 162092 ATGCAAATTTTCGTGAAGACCCTTACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 162151 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | |||||| ||||||| || ||||| || || || || || || Sbjct 162152 GATACGATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGAATTCCTCCAGACCAA 162211 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 |||||| | || | | || || ||||| ||||||| | | || ||||||||| Sbjct 162212 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGCACACTCTCTGATTACAAT 162271 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || ||||| ||||| ||| | ||| | || | | |||||||||||| Sbjct 162272 ATACAAAAGGAATCAACCCTGCATCTTGTACTTCGTCTGAGAGGAGGAA 162320 Score = 95.1 bits (104), Expect = 1e-14 Identities = 159/230 (69%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 25174 CATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAA 25233 |||||| | || || || ||| | || |||||| | ||||| | ||||| ||||| Sbjct 160424 CATGCAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACCCTTGAAGTTGAAGCTTC 160483 Query 25234 CGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCA 25293 |||||| || ||| | || ||| ||| ||| |||||||| ||||| || || || || Sbjct 160484 CGATACAATTGAGAACGTGAAAGCAAAGATTCAAGATAAAGAAGGTATTCCTCCAGACCA 160543 Query 25294 GCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAA 25353 || || | || | | || |||||| | ||||||| | | | |||||||| Sbjct 160544 ACAGAGGTTGATCTTTGCTGGTAAACAATTGGAAGATGGGCGCACACTTTCTGATTACAA 160603 Query 25354 TATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||| ||||| ||||| ||| | ||| | || | | |||||||||||| Sbjct 160604 TATACAAAAGGAATCAACCCTGCATCTTGTACTTCGTCTGAGAGGAGGAA 160653 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/205 (71%), Gaps = 4/205 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| | || |||||| |||| || | ||||| || || Sbjct 161636 ATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACGATAACTCTGGAAGTTGAGGCTTCA 161695 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || || ||| |||||||| ||||| ||||| ||||| Sbjct 161696 GACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAA 161755 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 || ||| | || | || || |||||| | ||||| | | | ||||| || || | Sbjct 161756 CAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCA--GACTATA 161813 Query 25353 ATATTCAAAAAGAATCCACCATTCA 25377 |||||||||||||||| || |||| Sbjct 161814 ATATTCAAAAAGAATCGACTCTTCA 161838 Score = 87.8 bits (96), Expect = 2e-12 Identities = 144/206 (70%), Gaps = 4/206 (2%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| | || || ||| |||| || | ||||| || || Sbjct 162556 ATGCAAATTTTTGTAAAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTCA 162615 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || |||||||| | || || || ||| |||||||| ||||| || |||||||| Sbjct 162616 GACACTATCGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCAA 162675 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAA--ATGTCAGCGATTACA 25352 || ||| | || | || || |||||| | || || | | | | |||| ||| || | Sbjct 162676 CAGAGATTGATCTTCGCTGGTAAACAATTGGAGGACGGTCGCACGCTGTC--CGACTATA 162733 Query 25353 ATATTCAAAAAGAATCCACCATTCAT 25378 |||||||||| || || || ||||| Sbjct 162734 ATATTCAAAAGGAGTCAACTCTTCAT 162759 Score = 82.4 bits (90), Expect = 7e-11 Identities = 162/239 (68%), Gaps = 12/239 (5%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||||||||| | || || ||| |||| || | ||||| || || Sbjct 162320 ATGCAAATTTTTGTAAAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTCA 162379 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTAT--------ACCGC 25286 || |||||||| | || || || ||| |||||||| ||||| | ||| Sbjct 162380 GACACTATCGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCGC 162439 Query 25287 CCGATCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAG--AAATGTCAG 25344 | ||||| || ||| | |||| | || |||||||| ||||||| | | | ||| Sbjct 162440 CGGATCAACAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGACGCACACTATCA- 162498 Query 25345 CGATTACAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||||||||| || ||||| || |||| | || | | | |||||||||| Sbjct 162499 -GATTACAATATTCAGAAGGAATCGACTCTTCACCTTGTTCTTCGTCTCAGAGGAGGAA 162556 >seq129 Length=1828789 Score = 96.9 bits (106), Expect = 3e-15 Identities = 140/196 (71%), Gaps = 4/196 (2%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| ||||| | ||||| ||||| || || || ||| | ||||| | ||||| ||||| Sbjct 1158592 CAAGATGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGC 1158651 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 |||||||| || | |||||| ||||| |||||||| || || || || || Sbjct 1158652 ATCAGATACTATTGAAAATGTAAAAGCTAAAATCCAGGATAAAGAAGGAATTCCACCTGA 1158711 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAAT--GTCAGCGAT 25348 ||||||| | || |||| | || || ||| | ||||||| | | | ||||| || Sbjct 1158712 TCAGCAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAG--AT 1158769 Query 25349 TACAATATTCAAAAAG 25364 || ||||||||||||| Sbjct 1158770 TATAATATTCAAAAAG 1158785 >seq418 Length=3833963 Score = 93.3 bits (102), Expect = 4e-14 Identities = 222/328 (68%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 137389 ATACCGATAGGTCTGTGTTTAAAATTTGATATTTGAGCGCTAACAAGCGGATAAAAGTTT 137448 ||||| ||||| || ||||||||||||||| ||| || | || ||||||| | || Sbjct 2669505 ATACCTATAGGCCTATGTTTAAAATTTGATGTTTTTGCTTCATGAACCGGATAATAATTC 2669446 Query 137449 GCGTCTATAATTCTATTGAGATTGTTAGTAACGACTCTGGACACTTTGTAGAGCAATTCG 137508 | || |||||| | | | ||| |||||| | | | | ||||| || ||| Sbjct 2669445 ACATCGATAATTTTGTCTAAATTACAAGTAACAATTTTTGTTACTTTTCGCAGTTTTTCA 2669386 Query 137509 AAATCGAAGCTTTTAG-ACTGTTTGTTAGCAAAATTATTGACGGCAATAGAGGCTAAGTT 137567 ||||| || | | | |||| ||| |||| | || || || || || ||||| || Sbjct 2669385 AAATCAAATGTCTGATTACTGGAGTTTA-CAAACATGTTCACTGCGATTGAAGCTAAATT 2669327 Query 137568 GCATACGGCCGTTTCTGTATTGTC-GCTGTATTGTACAATTTCGGCGCAAAGATTGCTGT 137626 |||||| || |||| | | | | | |||||||| ||||| | || | ||| ||| Sbjct 2669326 GCATACAGCGATTTCA-TCTGGACTGGAATATTGTACGATTTCTGTACACAAATTACTGC 2669268 Query 137627 TTCGGATCACTCCCAAATTCTTTTGATTGTTTTTCTCGTTGACG-TGATCTTTATATATC 137685 || ||| || ||||| | ||||| ||| || | || ||||||||||| | | Sbjct 2669267 TTTTGATTGTCCCTAAATTTTGATGATTTGATTTA-CGATTACAATGATCTTTATAAAGC 2669209 Query 137686 ATATACGGAGTTCCGGTTTCGACTTGAG 137713 || || |||||||| ||||| ||||||| Sbjct 2669208 ATGTAAGGAGTTCCTGTTTCAACTTGAG 2669181 >seq2682 Length=416 Score = 82.4 bits (90), Expect = 7e-11 Identities = 158/231 (68%), Gaps = 4/231 (2%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | || || || || | || |||||| |||| || | ||||| || || Sbjct 320 ATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCTTCA 261 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 || ||||| || | || || || ||| |||||||| ||||| || |||||||| Sbjct 260 GACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCAA 201 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACA 25352 || ||| | || | || || |||||| | ||||| | | | |||||| | || | Sbjct 200 CAGAGAGTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAG--ACTATA 143 Query 25353 ATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 |||||||||| ||||| || ||||| | || | | | |||||||||| Sbjct 142 ATATTCAAAAGGAATCGACTCTTCATCTTGTTCTTCGTCTCAGAGGAGGAA 92 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445063471502880