Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq739 111 1e-19 seq503 87.8 2e-12 seq129 86.0 6e-12 >seq739 Length=1399493 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || || | ||||| || ||||| | ||| ||| || |||||||| ||||| | Sbjct 7488 TTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTG 7429 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||| | || || || || || || ||||| ||||| ||||||||||| | || Sbjct 7428 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7369 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||| ||||| |||||| ||||| | | | | ||||| | ||| | Sbjct 7368 GAATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTA 7309 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | |||| || || |||||||| || | ||||| ||||| |||||||||| Sbjct 7308 CTTCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCATTC 7258 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || || | ||||| || ||||| | ||| ||| || || ||||| ||||| | Sbjct 7716 TTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGGATGTTATAATCTG 7657 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||| | || || || || || || ||||| ||||| ||||||||||| | || Sbjct 7656 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7597 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||| ||||| |||||| ||||| | | | | ||||| | ||| | Sbjct 7596 GAATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTA 7537 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | |||| || || |||||||| || | ||||| ||||| |||||||||| Sbjct 7536 CTTCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCATTC 7486 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | ||||| || ||||| | || ||| || || ||||| ||||| | Sbjct 7944 TTCCTCCACGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTG 7885 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||| | || || || || || || ||||| ||||| ||||||||||| | || Sbjct 7884 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7825 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | ||| ||||| |||||| ||||| | | | | ||||| | ||| | Sbjct 7824 GAATACCCTCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTA 7765 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 | |||| || || |||||||| || | ||||| ||||| |||||||||| Sbjct 7764 CTTCCAAGGTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCATTC 7714 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| ||||| | ||||| || ||||| | || ||| || || ||||| ||||| | Sbjct 8202 TTCCTCCACGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTG 8143 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||| | || || ||||| || || ||||| ||||| ||||||||||| | || Sbjct 8142 AAAGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 8083 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| | ||| |||||| ||| ||| | ||| | | | | | ||||| | ||| Sbjct 8082 GAATACCCTCTTTGTCC-TGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCA 8024 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || |||| ||||| ||||| || || | ||||| ||||| |||||||||| Sbjct 8023 ACTTCCAAGGTGATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCATTC 7972 Score = 100 bits (110), Expect = 3e-16 Identities = 163/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || || | ||||| || ||||| | ||| ||| || |||||||| ||||| | Sbjct 7260 TTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTG 7201 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||| | || || || || || || ||||| ||||| ||||||||||| | || Sbjct 7200 AAAGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 7141 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTG-CTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 ||| | ||| |||||| ||| ||| | ||| | | | | | ||||| | ||| Sbjct 7140 GAATACCCTCTTTGTCC-TGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCA 7082 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCATTC 35738 || |||| || || ||||| || || | ||||| ||||| |||||||||| Sbjct 7081 ACTTCCAAGGTAATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCATTC 7030 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||| || || | ||||| || ||||| | ||| ||| || |||||||| ||||| | Sbjct 7032 TTCCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTG 6973 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | |||| | || || ||||| || || ||||| ||||| ||||||||||| | || Sbjct 6972 AAAGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAG 6913 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCA 35687 ||| | || ||||| |||||| |||| | | | | ||||| | ||| | Sbjct 6912 GAATACCTTCTTTGTCTTGGATCTTAGCTTTCACATTCTCTATTGTGTCAGAAGCTTCAA 6853 Query 35688 CCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || | || || ||||| || || || || || || || |||||||| Sbjct 6852 CTTCAAGAGTAATAGTTTTCCCTGTTAAGGTCTTAACGAAGATCTGCAT 6804 >seq503 Length=216272 Score = 87.8 bits (96), Expect = 2e-12 Identities = 136/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Minus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 ||||| |||||||||||||| | | || || | || ||||| || ||||||||||| Sbjct 161071 TCCTTCTGAATGTTGTAATCTGATAGTGTGCGTCCATCTTCCAGTTGTTTACCCGCAAAA 161012 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGC-TTCAGAGT 35664 ||||| | ||| || || | |||| | ||||| | | ||| |||||| || | | | Sbjct 161011 ATCAATCTCTGTTGATCTGGCGGAATTCCTTCCTTAT-CTTGAATTTTTGCTTTTACATT 160953 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | ||||||| | ||| || || | ||||| ||||| || || | || ||||| Sbjct 160952 TTCTATCGTGTCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGTAAGGGTCTTCAC 160893 Query 35725 AAATATCTGCAT 35736 || || ||||| Sbjct 160892 GAAAATTTGCAT 160881 >seq129 Length=1828789 Score = 86.0 bits (94), Expect = 6e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 35549 TTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATC 35608 |||||||| || ||||| | || || || | || |||| ||||| || ||||| || Sbjct 1158783 TTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAATA 1158724 Query 35609 AACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC-AGAGTTGC 35667 | || ||||| || | |||| | || || ||| ||| ||| |||| | | || | Sbjct 1158723 AGACGTTGCTGATCAGGTGGAATTCCTTCTTTATCCTGGAT-TTTAGCTTTTACATTTTC 1158665 Query 35668 CACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAA 35727 | || || | ||| || || | ||||| |||||||| ||||||||||||||||| Sbjct 1158664 AATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAAA 1158605 Query 35728 TATCTGCAT 35736 ||||||||| Sbjct 1158604 TATCTGCAT 1158596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450762275479720