Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22]
5,559 sequences; 249,185,056 total letters
Query= NC_026607.2
Length=159914
Score E
Sequences producing significant alignments: (Bits) Value
seq2372 149 6e-31
seq916 109 6e-19
>seq2372
Length=84335
Score = 149 bits (164), Expect = 6e-31
Identities = 308/455 (68%), Gaps = 4/455 (1%)
Strand=Plus/Plus
Query 133252 CATCAAATCATTGATTTGCAGACCATAGTCTAGATGACGAATACGGTTTTCATCTACGCC 133311
||| || | ||| ||||| | ||||| |||| ||| || | || ||||| || | ||
Sbjct 73691 CATTAATTTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACC 73750
Query 133312 TTTGTTGTTCTTTAATACCAACAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAG 133371
||| || || ||||| | |||||| || || | |||||| | |||||| | |
Sbjct 73751 ACGGTTATTGCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATAC 73810
Query 133372 AGTAGCTGCACCACCACGTACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 133431
|| || || || || ||||| |||||||||||||| ||||| || || || || || |
Sbjct 73811 CGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTA 73870
Query 133432 TTTCCAGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 133491
|| | || ||||| |||||||| |||||||| | || |||
Sbjct 73871 CTTATAAAATGGAATACAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTAA 73930
Query 133492 AGCTCGAATCATACCGGCGTTGATGCCGATACCAGCTCGCTTGCTGATA--TACTTAATA 133549
|| || ||| ||||||| || ||||| || ||||| || ||| ||||| || |||| |
Sbjct 73931 GGCACGGATCTTACCGGCATTAATGCCAATTCCAGCGCG-TTG-TGATACGTATTTAACA 73988
Query 133550 ATACTGTTACTTGCCGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAA 133609
||| | | | |||||||| || | || ||| | ||||| | ||||||
Sbjct 73989 ATAGCGCTCGCGGTGGCATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACAC 74048
Query 133610 GAACTAAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATC 133669
||||||||||| ||||| ||||| || |||| |||||||| || ||||| | |||||
Sbjct 74049 GAACTAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATT 74108
Query 133670 TGTCGAGTAGATACAGCGTCATAAAAGCGAATAAT 133704
| || || | || |||||||| || ||||
Sbjct 74109 TTAAAGGTGGAAATCGCATCATAAAAACGTTTAAT 74143
>seq916
Length=289624
Score = 109 bits (120), Expect = 6e-19
Identities = 71/77 (92%), Gaps = 1/77 (1%)
Strand=Plus/Plus
Query 62449 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 62508
||||||||||| ||||||||||||||| |||||| ||||||||||||| ||||||| |||
Sbjct 161546 TGGTGGCCCCTACTGGACTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTGACC 161605
Query 62509 -ACTGAGCTAAGGGGCC 62524
||||||||||||||||
Sbjct 161606 AACTGAGCTAAGGGGCC 161622
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 511561250417360
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |