Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_027119.1 Length=157498 Score E Sequences producing significant alignments: (Bits) Value seq2372 96.9 3e-15 >seq2372 Length=84335 Score = 96.9 bits (106), Expect = 3e-15 Identities = 267/406 (66%), Gaps = 10/406 (2%) Strand=Plus/Minus Query 60071 CTTCCAACACCTATTATGTCCGGCGTCCGCACCCCGACCCGACAGTTCAGCTCTTGTGTA 60130 || || || || |||||| | || || ||||| || || || ||||| || || |||||| Sbjct 74101 CTACCTACGCCAATTATGGCGGGGGTGCGCACTCCAACTCGCCAGTTTAGTTCGTGTGTA 74042 Query 60131 TTGATCAAAACTGGTGATACATTGGACTCAATTAATGCCACTGCGAAAAGCATCGTGGAT 60190 ||||| | | ||||| | ||||||||||||||||| |||| || || | Sbjct 74041 TTGATTGAGTGCGATGATAGTCTTGACTCAATTAATGCCACCGCGAGCGCTATTGTTAAA 73982 Query 60191 TATGTTTCCAAACGTGCTGGCATCGGATTCGATGTTGGGGCAATTCGTGGCATCGGTAGC 60250 || || || |||| ||||| || || | ||| || || |||| | | || || Sbjct 73981 TACGTATCACAACGCGCTGGAATTGGCATTAATGCCGGTAAGATCCGTGCCTTAGGAAGT 73922 Query 60251 CCTATCCGTAAAGGGGAAATGGTCCATACAGGTCTGGTTCCATTCATCAAGTATTT---G 60307 || ||||| || ||| | ||||||| ||| ||||||| ||||| || Sbjct 73921 CCGATCCGCGGTGGCGAAGCGTTCCATACTGGTTGTATTCCATTTTATAAGTACTTCCAA 73862 Query 60308 ACTGGTGCCCTGAAGTCTTGCTCTCAAGGCGGTATCCGTGGTGGATCGGCAACATGCTAT 60367 || | || |||| || || ||||||||||| | || || || ||||||| | ||| Sbjct 73861 ACAGCTG---TGAAATCCTGTTCTCAAGGCGGGGTACGCGGGGGGGCGGCAAC--GGTAT 73807 Query 60368 GT--TCCCATCTGGCATTATCAATTTGATGATGTCGTTGTTCTCAAAAACAACCGTGGAT 60425 | ||| | ||||||| || | || | | | || || || |||||||| Sbjct 73806 TTTATCCGTTATGGCATTTAGAAGTAGAAAACTTATTGGTGCTACGCAATAACCGTGGTA 73747 Query 60426 TGGAAGAGAACCGTGAACGCCGTATCGACTATGGGATTCAGATTAA 60471 | ||||| || || | |||| | | || |||||| | || ||||| Sbjct 73746 TTGAAGAAAATCGCGTGCGCCATTTAGATTATGGGGTACAAATTAA 73701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 503830587639120