Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_027213.1 Length=214699 Score E Sequences producing significant alignments: (Bits) Value seq418 190 3e-43 seq1274 123 3e-23 >seq418 Length=3833963 Score = 190 bits (210), Expect = 3e-43 Identities = 215/288 (75%), Gaps = 0/288 (0%) Strand=Plus/Minus Query 68643 TATAATTATATTCTTGATCTCATCATTCCACAATTTTCTCTCCGTTAAAACTCTAAGGAG 68702 ||||||| ||| || || || |||| ||| | | ||| || || | | ||| | | Sbjct 2670164 TATAATTTCATTTTTCATATCCTCATCCCAAAGATCTCTTTCAGTCAGATCTCGTAATAA 2670105 Query 68703 ATGCGGATTAACTATTTGAAATTCCCCAGATAACACTCTACGAGTGTAAATATTACTGGT 68762 ||| ||||| || | |||||| || ||||| || ||||| | | |||||||||||||| Sbjct 2670104 ATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCATAAATATTACTGGT 2670045 Query 68763 ATATGGTTCCACAGATTCATTATTTCCCAGAATTTGAGCAGTTGATGCAGTTGGCATAGG 68822 ||||||||| | ||||||||||||||| | ||||| ||||| ||||| ||||||||||| Sbjct 2670044 ATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGATGCCGTTGGCATAGG 2669985 Query 68823 TGCCACCAATAAACTATTTCTAAGACCATGTGTTATGATTTTATCTTTTAGATGTTTCCA 68882 || | |||||| |||||||| |||||| | ||||| ||||| ||| | |||| Sbjct 2669984 GGCGATTAATAAAGAATTTCTAACTCCATGTTTAGCAATTTTTTCTTTCAGAATTGTCCA 2669925 Query 68883 ATCCCAAAGATCAGATGGTACAACATTCCAAAGATCGTATTGTAGAAT 68930 | ||| | || || ||| ||||||||| | ||| ||||||| ||| Sbjct 2669924 GTTCCATAAATTAGTTGGAGTAACATTCCACATATCATATTGTAAAAT 2669877 Score = 174 bits (192), Expect = 2e-38 Identities = 221/304 (73%), Gaps = 0/304 (0%) Strand=Plus/Minus Query 69668 TAttttttttAAGATCGAGAAACTCCATAATATCAGAATGCCATGGTTCTAGATATATCG 69727 |||| ||||||||||| | ||| || | ||||| | |||||||||||||| |||||| | Sbjct 2668758 TATTCTTTTTAAGATCTAAAAATTCAAAGATATCTGCATGCCATGGTTCTAAATATATAG 2668699 Query 69728 CCATGACTCCCGGTCGTTTATTTCCTCCCTGATCTATGTATCTGGCAGTGTTATTATAGA 69787 | | |||| |||| |||||||||||| ||||| | |||| || || ||||| || | Sbjct 2668698 CAAATGCTCCTGGTCTTTTATTTCCTCCTTGATCAACATATCGAGCTGTATTATTGTATA 2668639 Query 69788 CTCTCAGCATCGGAATAATACCATTAGATTTACCATTTGTTCCAGAAATATAACTTCCTC 69847 |||| ||||| ||||| | |||||||||| |||| ||| |||| || | |||| Sbjct 2668638 CTCTGAGCATTGGAATTAAACCATTAGATACACCAAGTGTACCAGCTATTGGTGTGCCTC 2668579 Query 69848 TTGCGCGAATATTACTAATAGATAGACCTATTCCTCCTGCCATTTTAGAGATTAGAGCAC 69907 |||| |||||| | | | || || || || || || ||| || || |||| Sbjct 2668578 TTGCTCGAATACAATGTACATTAAGTCCAATACCACCAGCTGATTTGCTAATAAGTGCAC 2668519 Query 69908 AACGTTTCAATGTGTCATATATACCCTCTATGCTATCATCTATCATGTTAAGAAGAAAAC 69967 | | ||| ||||| ||||| || || |||||||||||||| |||| | || | ||||| Sbjct 2668518 ATCTTTTTAATGTATCATAAATTCCATCTATGCTATCATCACTCATTGTTAGTAAAAAAC 2668459 Query 69968 AGCT 69971 | || Sbjct 2668458 AACT 2668455 Score = 138 bits (152), Expect = 2e-27 Identities = 140/179 (78%), Gaps = 4/179 (2%) Strand=Plus/Minus Query 69503 GTGTATATAGCCGTTCGAATTCATCTCCCCAAACATCATCCAATCCAGGACATTCATTTG 69562 ||||||| || ||| |||||||| |||||||||||| | |||||| |||||| || Sbjct 2669018 GTGTATAGAGAGCTTCAAATTCATCGCCCCAAACATCAGGTAGACCAGGAGATTCATGTG 2668959 Query 69563 GACACATCAATGACCACACATCATCATCCTTAACTCGTTTCATAAATAGATCGGGAATCC 69622 ||||||| || ||||| ||| ||| ||| ||||||||||||||| ||||| || |||| Sbjct 2668958 GACACATTAAAGACCATACACCATTATCGAAAACTCGTTTCATAAAAAGATCAGGTATCC 2668899 Query 69623 AAAGAGCTATA-AAGAGATCTCTGGTTCTATTTTCTTCATTTCCTGT--AttttttttA 69678 | | ||| ||| || | ||||| | |||||||||||| || ||||| ||| || ||| Sbjct 2668898 ATAAAGC-ATAGAATAATTCTCTTGCTCTATTTTCTTCTTTACCTGTCAATTATTATTA 2668841 Score = 109 bits (120), Expect = 8e-19 Identities = 123/165 (75%), Gaps = 0/165 (0%) Strand=Plus/Minus Query 68955 ATATGTTTCATAAGGTCCTTCCTGTTCAGCTAGTTCACAACTTGCCTCTAATGCACCGTA 69014 ||| |||||||| | |||| || | |||| ||||||||||| |||||||||||||| || Sbjct 2669751 ATAGGTTTCATATGTACCTTTCTCTGCAGCAAGTTCACAACTAGCCTCTAATGCACCATA 2669692 Query 69015 ATAAATTGTTTCGAAAATCTTCTTATTGAGATCTTGTGCTTCTAGACTATCGAATGGATA 69074 ||| | ||| || || || | |||| || | ||||||||| ||| || || ||||| Sbjct 2669691 ATATAATGTCTCAAATATTTGGATATTAAGTTTTTGTGCTTCCTCACTTTCAAACGGATA 2669632 Query 69075 ATGTAAAAGAATAAATGCATCTGCCAATCCCTGAACCCCAATACC 69119 | | | || ||||||||||| | ||||||| ||||| || Sbjct 2669631 TCGCATTAAAAGGAATGCATCTGCAAGACCCTGAATTCCAATCCC 2669587 Score = 98.7 bits (108), Expect = 1e-15 Identities = 183/266 (69%), Gaps = 2/266 (1%) Strand=Plus/Minus Query 69970 CTAGACATTTGATGATGTATAGTTCCCGCATTAAATAATGTAGGAGATGCGTGAGTGAAC 70029 ||||||||||| || || |||| | ||| ||| | || |||||||| || || || Sbjct 2668383 CTAGACATTTGCTGTTGCCTAGTACAGGCAAAAAAAAGTGATGGAGATGCATGTGTAAAA 2668324 Query 70030 CATTTTTCAGAAAGCAGATTGTATGTTTCAATAGCTGATTCTATATC-CCACTGATGAAT 70088 | ||| || | | |||||| ||||| |||||| || ||||| ||| |||||| Sbjct 2668323 TAACGTTCTGATAAAAAATTGTAAGTTTCTATAGCTTTATCAATATCTTCAC-CATGAAT 2668265 Query 70089 TCCTATCGCGACACGCATCAACATATGCTGAGGTCGTTCTACCGTTTTATTATTTATTTT 70148 | | || || | ||| ||||| || || |||| ||| || ||| | |||||| Sbjct 2668264 GGCAACTGCAACTCTCATTAACATGTGTTGTGGTCTTTCAACAACTTTCCCTTGTATTTT 2668205 Query 70149 CAACAGGTATGATTTTTCCAGAGTTTTAAACCCAAAATAGTTGTATGAAAAGTCTCTTTC 70208 || | || | |||| || || ||||| ||||| || || || ||||||||| || Sbjct 2668204 TAATAAATAACTTCTTTCAAGTGTCTTAAAACCAAAGTAATTATAACTAAAGTCTCTATC 2668145 Query 70209 GTAAATAATAACAGAATTTAGTTTAT 70234 ||||| || ||||||||| |||| Sbjct 2668144 ATAAATTATTGCAGAATTTAACTTAT 2668119 >seq1274 Length=440581 Score = 123 bits (136), Expect = 3e-23 Identities = 158/218 (72%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 39876 TATCTTTAACATATGTATCTATTAACAGACTATACATTTCTGAATGGATGTTTTCAATCG 39935 ||||| | | ||||||||| || |||| ||||||||||| || | ||||| || | Sbjct 124446 TATCTGTGATATATGTATCAATCAACATGGAGTACATTTCTGAGTGCACATTTTCTATGG 124505 Query 39936 CCATCTGAAATCCGTAAAAACATCTTGCTTCAGTAATTTGTACCTCTGAACAAAATCTTT 39995 | | ||||| || || ||||| | ||| || || | |||||| || || ||||| || Sbjct 124506 CGACTTGAAAACCATAGAAACAACGTGCCTCGGTTACTTGTACTTCCTGACTAAATCGTT 124565 Query 39996 CCGCCAAATTTTCATTCACTATTCCATCACTAGCGGCAAAAAATGCCAATACATGTTTAA 40055 | | | ||| ||||| || ||||||||| ||| ||||| ||||| || ||||| | Sbjct 124566 CGACAAGATTCTCATTAACGATTCCATCAGAAGCCGCAAAGAATGCTAAGACATGAGATA 124625 Query 40056 TAAAATATTTTTCATCGGGTGTCAATTTATTCCAGTCA 40093 | |||| ||| ||||| ||||| | |||||||||| Sbjct 124626 TGAAATGTTTCTCATCACTAGTCAAATGATTCCAGTCA 124663 Score = 120 bits (132), Expect = 4e-22 Identities = 161/223 (72%), Gaps = 6/223 (3%) Strand=Plus/Plus Query 39422 TTTTTAAATCCTAATTCTGAAATCAATCTATCTGCAACAAATTCTATGTATGTTTTCATC 39481 |||| | | |||||||||| || |||||||| ||||||||||| || ||| ||| Sbjct 123700 TTTTCACAGCCTAATTCTGTAAGTAATCTATCAGCAACAAATTCGATATATTGACACATA 123759 Query 39482 ATTTCACAATTCATTCCTATGAGTTTAACTGGTAGAGCCTCCGTTAGAAACTCTTTTTCG 39541 | | ||| ||||||||||| | || ||| |||| ||| ||||||| ||| |||| ||| Sbjct 123760 AGTGTACAGTTCATTCCTATCATTTGAACAGGTAAAGCTTCCGTTAAAAATTCTTGTTCA 123819 Query 39542 ATGTCTACGGCCTCTGTTATTATCGATGTTACTACCTCATCACTCGGTGG---ATGCAAT 39598 || | ||||| ||| | || || ||||| ||| ||| | | ||| || | Sbjct 123820 ATTTTGACGGCATCTTTAATAATTGATGT---GACCCGATCGCAAGATGGTTTTTGTACA 123876 Query 39599 AAATGTTTAAACATTAAGCAGGCGAAGTCACAATGTAGGCCCT 39641 | |||||| ||||| || || ||||| |||||||||| |||| Sbjct 123877 ATATGTTTGAACATCAAACATGCGAAATCACAATGTAATCCCT 123919 Score = 104 bits (114), Expect = 3e-17 Identities = 160/226 (71%), Gaps = 7/226 (3%) Strand=Plus/Plus Query 39639 CCTCATCTCTACTAATTAATTCGTTAGAAAATGTGAGTCCAGGCATTAGACCACGCTTTT 39698 ||||||||||| ||| | || ||| |||||| ||||| ||||||| ||| | |||| Sbjct 124113 CCTCATCTCTAGAAATAAGCTCATTACTAAATGTAAGTCCTGGCATTAAACCTCTTTTTT 124172 Query 39699 TGAGCCAAAATATGGCAGCAAAAGATCCAGAAAAGAAGATGCCTTCTACTGCTGCAAATG 39758 | ||||| || || || |||||| || |||||| || ||||| ||||| ||||||| Sbjct 124173 TCAGCCAGAAAATAGCGGCAAAACTACCGCTAAAGAAAATACCTTCCACTGCAGCAAATG 124232 Query 39759 CAACAAGTCTCTCTCCGTAACT-TG----TATCATTATGTATCCACTTCTGTGCCCAATC 39813 |||| | | | || | || | || | |||| || |||||| || |||||| | Sbjct 124233 CAACCA--CACGTTCAGGAAATGTGGCACTCTCATGATTTATCCAATTTAATGCCCAGTT 124290 Query 39814 AGCTTTCTTCTTTACACAAGGCATTGTTTCTATAGCATTAAAGAGA 39859 |||||| ||| || || || | |||| || ||||| || ||| Sbjct 124291 AGCTTTTTTCGCAACGCATGGTAAATTTTCAATCGCATTGAACAGA 124336 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 686861068424760