Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_027331.1 Length=170341 Score E Sequences producing significant alignments: (Bits) Value seq2372 132 5e-26 seq1913 102 9e-17 >seq2372 Length=84335 Score = 132 bits (146), Expect = 5e-26 Identities = 253/369 (69%), Gaps = 14/369 (4%) Strand=Plus/Plus Query 143202 TTCTCGACTTCAAGATGCCAAATTGGATAGTACAATGTTGCGGCACCACCACGAACTCCG 143261 || || ||||| | |||||| | ||||| | | ||||| || || || || || ||| Sbjct 73776 TTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCCCCCGCGTACCCCG 73835 Query 143262 CCTTGGGAACAGGATTTAACTGCAGTTTGGAAGTGTTTCCAGAAAGGAATAACTCCAGTA 143321 ||||| ||||||||||| || || |||||||||| || | || |||||| |||||| Sbjct 73836 CCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAATGGAATACAACCAGTA 73895 Query 143322 TGCTTGACTTCACCGTTTCCGATTTTTGAACCTTCT---GCACGCAACATCCCCGCGTTA 143378 || |||| || | ||| | || | || ||||| | | | || || ||| Sbjct 73896 TGGAACGCTTCGCCACCGCGGATC---GGACTTCCTAAGGCACGGATCTTACCGGCATTA 73952 Query 143379 ATGCCAATACCTGCACGCT----TACTGATATACTCAATAATGCTTGCACTGGCTTTGTT 143434 |||||||| || || || | ||| || || ||||| ||| || |||| || Sbjct 73953 ATGCCAATTCCAGCGCGTTGTGATACGTATTTAA-CAATAGCGCTCGCGGTGGCATT--- 74008 Query 143435 AATTGACTTAAGTGAGTCACCAGCTTCAATAACAACACAAGAGCTAAACTGACGAGTCGG 143494 |||||| | ||| ||| | ||||| | ||||| || |||||||| ||||| || Sbjct 74009 AATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAACTAAACTGGCGAGTTGG 74068 Query 143495 TGTACGAGCCCCGGCCATAATTGGAGTAGGCAAAGAAATTTGACGAGTAGATACGGCGTC 143554 || || |||| ||||||||||| ||||| | ||||||| | || || | || || Sbjct 74069 AGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATTTTAAAGGTGGAAATCGCATC 74128 Query 143555 ATAAAAACG 143563 ||||||||| Sbjct 74129 ATAAAAACG 74137 Score = 96.9 bits (106), Expect = 4e-15 Identities = 417/646 (65%), Gaps = 25/646 (4%) Strand=Plus/Plus Query 141026 TGAGTGCCTTTTAGGTGAAGCTGTTCATCACGAGCAATAAACTTCATGATCTTCGCATTA 141085 ||||| || | |||||||| |||||| || ||||| | || || || || ||||| Sbjct 71603 TGAGTACCGGTAAGGTGAAGAGCTTCATCGCGGGCAATCAGTTTAATAATTTTGGCATTT 71662 Query 141086 CCTTCCATGATTTCCATGTTTTTGTGGAAGTTGAAAGTACAAGCGAAAGATA-CATAAAA 141144 |||||||| | ||| | || | ||| || | || || |||| || ||||||| Sbjct 71663 CCTTCCATTAATTC---GCGTTCGGCAAAGGCAAACGAGCAGGC-AAAGCTAACATAAAA 71718 Query 141145 ACGAATAGCTTCAAGAGCATTGATG-ACATGCAAACAGAGATAAAGACTCTTCATCAAGT 141203 |||||||||||||| ||||||| | ||| |||||||||||||| | ||| | || | Sbjct 71719 TCGAATAGCTTCAAGCGCATTGACGCTCAT-TAAACAGAGATAAAGTTTTTTCTTTAATT 71777 Query 141204 CATG---TTTTGCATCAATGATTT---CATAGCTGTCAGGGTTAAAGCATAGTTCTTTGG 141257 || | || |||| ||| ||| | | | || | | | || | | Sbjct 71778 CACGCAAGTTAATGGTAATGGTTTTACCATTAATTTGATGGGT-ACCCGTACCTAAT--- 71833 Query 141258 CATTCTCGTATTCACGAGTTTTCTTCAGAACGTCATCATAATATACACCGATTGATTCG- 141316 | ||| | | ||| | | | | ||||||||||| | |||| || || Sbjct 71834 --AAATGGTAGTAATTAGTGGTAGTAATTAAATCATCATAATAACGAGCGAT--ATCCGT 71889 Query 141317 -GCACGTTTCATGATTGCTTCATCAAGAACAATTTCATCAAAGATCTTAGCAGGATCATT 141375 |||||||| ||| | | || | |||||| |||||||| ||| || ||||||||| Sbjct 71890 TGCACGTTTTTGGATCTCCTGATTATTAACAATATCATCAAAAATCAAAGAAGGATCATT 71949 Query 141376 GAACAAGTTACGCATGATGTGGGTGTAAGAACGAGAGTGAATCGTTTCAGAGAACGTCCA 141435 || | || || || || || || || || || || ||||| || ||||| || | ||| Sbjct 71950 GACAATATTGCGAATAATATGCGTATAGGAGCGCGAATGAATAGTCTCAGAAAATGACCA 72009 Query 141436 AGTCTGGTTCCAAGTATCCAA-AGAAGGATCGCTAATCAGAGCAGACAAGACAGCAGCAG 141494 ||| | ||| || || || | |||| | ||| |||| | || | || | Sbjct 72010 AGTTTCTACCCATGTTTCTAATTCAGGGATAG-AAATTAGAGGTAATAATGCCACATTTG 72068 Query 141495 GTGCTCGACCTTGAATTGAATCCAATAAGCTCTGATACTTCAAGTTGTTGATAAAAATAT 141554 | || |||||||| || || |||||| | ||||| || || || ||||||| |||| Sbjct 72069 GACTACGTCCTTGAATGGAGTCTAATAAGGTTTGATATTTTAAATTACTGATAAAGATAT 72128 Query 141555 TTTGCTGATGAACTGGGAGCTTCTCATATTGAGCTCGGTCAGTCATTAAGTTAACTTCTT 141614 || | ||| | || |||| || ||| | | || || | | | | || |||| Sbjct 72129 GTTTTTCATGTTCAGGTAGCTGCTGATAATCAATACGATCTTTAGTAATATCCACCTCTT 72188 Query 141615 CTGGGCGCCAGAAGAAACTCAACTGCTTTTCAATTAGGTCTTCAAA 141660 |||| ||||| || || | || |||||||| | | |||||| Sbjct 72189 CTGGACGCCAAAAAAAGGAGAGTTGTTTTTCAATCAATTTTTCAAA 72234 >seq1913 Length=212763 Score = 102 bits (112), Expect = 9e-17 Identities = 207/306 (68%), Gaps = 5/306 (2%) Strand=Plus/Minus Query 39908 GCCACTTGAGCCGTAATTTGAGCCATAATAGCGGTTGCTACTCCAATTGACTTTGGAGTC 39967 || ||||| || |||| || || | | |||||| || | |||||| || || | Sbjct 32099 GCTACTTGGGCTATAATCTGTGCGGTTACAGCGGTGGCAGTTGAAATTGATTTAGGCGGT 32040 Query 39968 TCAATTTGAGCATTACCGAGTTTAAATCCGTTATTAAGCATTCCCTTCAAATCAACTAAA 40027 ||||||| |||||| || | |||||| || || | |||||||| | ||||||| || Sbjct 32039 TCAATTTCAGCATTTCCCATTTTAAAACCCTTGGTTAGCATTCCATCTAAATCAATTAGC 31980 Query 40028 CAGCAGTTAGTGAATGGAAGAGCTGGAGAATAGTCTAAGTCATGAAAATGAATAAGCCCT 40087 ||||||| | || | | |||| ||| || | |||||| ||||||| || Sbjct 31979 ATGCAGTTAAACATAGGGAAAAAGGGAGCATAATCCAGATCATGATAATGAATTTCACCA 31920 Query 40088 TTATCATGAGCATTTAGAACAGTC----GGAGAGATAACTTGACGAGCAATATGTTTTGA 40143 |||||| ||| | |||| || || ||||| ||| |||| |||||| | Sbjct 31919 CGATCATGCGCAAT-AGAAATTTCTTTAGGTAAGATATATTGCTTAGCATAATGTTTAGC 31861 Query 40144 AACAATCCCTGCCATCAGGTCTCGTTGAGTTGGAAAAACACGAGAATCTTTATTAGCATT 40203 ||| || ||||| | | || || ||||| |||| ||| | ||||||||||||||| Sbjct 31860 AACGATACCTGCTAATAAATCGCGCTGAGTAGGAATAACTTTACTATCTTTATTAGCATT 31801 Query 40204 CTCGTT 40209 ||||| Sbjct 31800 TTCGTT 31795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544925331869640