Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_027339.1 Length=38389 Score E Sequences producing significant alignments: (Bits) Value seq916 107 5e-19 >seq916 Length=289624 Score = 107 bits (118), Expect = 5e-19 Identities = 286/437 (65%), Gaps = 0/437 (0%) Strand=Plus/Minus Query 9273 CGTATCGGGGGAACCTGTTATTTCAAAATTGACGGTCAGCAGCTATCGCTGACCGGCGGC 9332 ||||| | ||||| ||| | ||| | || | | | || || || || || ||||| Sbjct 140851 CGTATTGCAGGAACAACTTACATTAAAGTCGATGCTAACCAACTGTCACTTACAGGCGGT 140792 Query 9333 ATTGAGGTGCCCATGAACAGGACGGTCAATGATGACATCATCGGCCTGGACGGTTCAGTG 9392 ||||| || || ||||| | || || || || || || || | || | || Sbjct 140791 ATTGAAGTCCCGATGAATACGAATGTTAAAGAGAGTATTATTGGGTTAGATAATAGCGTT 140732 Query 9393 GACCGCAAGGAAACTCACCGTGCGCCTTATGTCAAAGGGACCTTCAAGGTGCCGAAGAAT 9452 || || ||||| |||||| || ||| | ||||| || || || || ||| || Sbjct 140731 CACTATAAAGAAACATTCCGTGCACCCTATATTAAAGGCACGTTTAAAGTACCGGGTGAT 140672 Query 9453 TTTCCGGTGAGCAAAATCACCTCGTCTGATGAGATGACCATCACTGCCGAGCTGGCGAAC 9512 |||||| | |||| | | || ||| | |||||||| || || || | || || Sbjct 140671 TTTCCGATCGACAAACTGATGTCCAGTGACAACATGACCATTACCGCAGAATTAGCTAAT 140612 Query 9513 GGTCAGGTCTATGTATTGTCGTCCGCCTGGCTGCACGGAGAAGCGAACCATAATGCCGAA 9572 ||| | || || || || || || ||| || | || |||| || || ||||| ||| Sbjct 140611 GGTAAAGTTTACGTGTTATCAAATGCATGGGTGGAAGGTGAAGTCAATCACAATGCAGAA 140552 Query 9573 GAAGGCACGGTTGATCTTGAGTTCCACGGTGAAGAAGGGGATTACCAGTAATGAAAGAGC 9632 ||||| || | ||| |||||||| || ||||||||||| ||| || |||||||||| Sbjct 140551 GAAGGTACAGCTGAACTTGAGTTTCATGGTGAAGAAGGATTTTATCAATAATGAAAGAAA 140492 Query 9633 TTGAGTTAAAGAAACCGATTACCGCTCATGGCGAGACACTCTCCGTACTGGAGTTTGATG 9692 || | ||| | ||||| | || || ||| | | | ||||| ||||| | | Sbjct 140491 TTAAATTATCACAGCCGATCATGGCACACGGCAATGAATTACATGTACTTGAGTTAAAAG 140432 Query 9693 AGCCCACCGGGAAAGAT 9709 |||| |||| || ||| Sbjct 140431 AGCCTACCGTCAAGGAT 140415 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 122715098658058