Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_027344.1 Length=158099 Score E Sequences producing significant alignments: (Bits) Value seq2372 152 5e-32 seq1913 122 9e-23 seq916 109 6e-19 >seq2372 Length=84335 Score = 152 bits (168), Expect = 5e-32 Identities = 309/455 (68%), Gaps = 4/455 (1%) Strand=Plus/Plus Query 14834 CATCAAATCATTGATTTGCAGACCGTAATCTAGATGACGAATGCGGTTTTCATCTACACC 14893 ||| || | ||| ||||| | || ||||||| ||| || | ||| ||||| || | ||| Sbjct 73691 CATTAATTTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACC 73750 Query 14894 TTTGTTGTTCTTTAATACCAAAAGGTTTTCAACCTCAAGATGCCACATTGGATAATAAAG 14953 ||| || || ||||| | |||||| || || | |||||| | |||||| | | Sbjct 73751 ACGGTTATTGCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATAC 73810 Query 14954 AGTAGCTGCACCACCACGGACACCGCCTTGAGAACAAGATTTTACTGCAGTCTGAAAATG 15013 || || || || || || || |||||||||||||| ||||| || || || || || | Sbjct 73811 CGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTA 73870 Query 15014 TTTCCAGAAAGGAATTACGCCAGTATGTTTTACTTCGCCATTACCAATTTTTGAGCCTTC 15073 || | || ||||| |||||||| |||||||| | || ||| Sbjct 73871 CTTATAAAATGGAATACAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTAA 73930 Query 15074 AGCTCGAATCATACCGGCGTTGATGCCTATACCAGCTCGCTTGCTGATA--TACTTAATA 15131 || || ||| ||||||| || ||||| || ||||| || ||| ||||| || |||| | Sbjct 73931 GGCACGGATCTTACCGGCATTAATGCCAATTCCAGCGCG-TTG-TGATACGTATTTAACA 73988 Query 15132 ATACTGTTACTTGCTGCATTAATAGAATTCAGTGAATCGCCAGCTTCAATAACTACACAA 15191 ||| | | | |||||||| || | || ||| | ||||| | |||||| Sbjct 73989 ATAGCGCTCGCGGTGGCATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACAC 74048 Query 15192 GAACTAAACTGACGAGTAGGAGTACGAGCCCCTGCCATAATCGGTGTAGGCAATGAAATC 15251 ||||||||||| ||||| ||||| || |||| |||||||| || ||||| | ||||| Sbjct 74049 GAACTAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATT 74108 Query 15252 TGTCGAGTAGATACAGCGTCATAAAAGCGAATAAT 15286 | || || | || |||||||| || |||| Sbjct 74109 TTAAAGGTGGAAATCGCATCATAAAAACGTTTAAT 74143 >seq1913 Length=212763 Score = 122 bits (134), Expect = 9e-23 Identities = 520/795 (65%), Gaps = 35/795 (4%) Strand=Plus/Minus Query 79775 GCTATACGAGGAAGATTTAATGTAACAACACCTAGATTATTGCGTCCATCAAGAATAAAT 79834 || |||||||||| |||||| ||| || |||| |||||| || |||||| |||| Sbjct 32699 GCAATACGAGGAATATTTAAACTAATTACCCCTAAATTATTACGCCCATCATGAATTTGC 32640 Query 79835 TTACCATCGGAATTTTTCC-ATGCGCTCAAAAAGCTTCTACACCCCATTGGAGATACAGG 79893 | ||||| || ||| | | | || || || | ||| |||||||| | | | Sbjct 32639 TGCCCATC----TTCTTCATAAACACCTAAGAAACTACGACAGCCCATTGGGGTTTTA-- 32586 Query 79894 AATAGGAGAACCAGTAATCTT-ACGA-TTATTCTTGGCGCTAATAATATCGGGATACATT 79951 ||| || || || | ||| || | || || | ||| ||||| ||||||||| Sbjct 32585 AAT----GATCCTGTTACCTTGACCACTTGATCATAAT--TAAGGATATCAGGATACATT 32532 Query 79952 CGCTTAGAAGCGCATTCTAAAGCTAGTTGTTTGATATCATAATTTGGGTC--TTCACTGC 80009 || |||| || || ||||| |||| |||||| || ||||||| | || || || Sbjct 32531 CGTTTAGCGGCACACTCTAATGCTAATTGTTTAATCGTATAATTTTGATCTGTTGGCT-- 32474 Query 80010 GAAGATTTAAACCTTC-TTCAACGAACATAACCAATTTAGGAAAAATTGGAGTAATTCCA 80068 | |||| | || || || | || | | || ||||||||||||| || || | | Sbjct 32473 TATGATTAACCCCATCTTTGATCGCA-AAGACTAATTTAGGAAAAACTGCCGTTTTATGA 32415 Query 80069 TGACGACCTAATCCCCGAATACG-ATTTTTAAGAATAGCTTGTTGAATTAGTTTTTCTTC 80127 | ||||| || |||||| | |||| || | || |||||||| | ||| Sbjct 32414 TTTTTTCCTAAACCAACAATACGCACACGTAAG-ATCGATTCTTGAATTAAGCGTGATTC 32356 Query 80128 CCAAGATGTCCCCATACCAAATGTAATGGTAACGAAAGGTGTTTGGCCGTTAGAACTGAA 80187 |||| || || | ||||||| || ||||| ||||| || || || || | | | Sbjct 32355 CCAACTGGTGCCTAAACCAAATCCAAATGTAACAAAAGGGGTCTGTCCATTCGCAGTATG 32296 Query 80188 AAGAGTATTAACTTCATATTCATATCCTTGAAAAGCATC-GAATACATCTTTTTCTGTTT 80246 || ||||| ||||||||||| | |||||| ||||| || || |||||||| || Sbjct 32295 TAGCGTATTGACTTCATATTCTAACGATTGAAATGCATCATAACAC-TCTTTTTCAGTAC 32237 Query 80247 TTTCTTGAGCGTATAATTCAGCTTCTGGAATATGATA-TCGGCGAGCGTCTTCGA-TATG 80304 | | |||||| ||| || ||||| || | || || || | | ||| ||| Sbjct 32236 GTGACTTAGCGTAGTTTTCGATATCAGGAATTTGCCACTCTTCG-GC-TATACGACGATG 32179 Query 80305 TTTGTTGAAAGTTGCTTC--TACATAAGGAGCTAGTACTTGGTCGACATTAGCAAATGTA 80362 ||| | || || ||| |||| | ||| || |||| || | | | || || Sbjct 32178 TTTTTCATAACTT--TTCGATACAAATTTAGCCAGAACTTCATCAATACGATTAATGGTG 32121 Query 80363 GTTCCACCATATTGATGAGAAGCTACTTGAGCTGTAATTTGAGCCATTACGGCAGTTGCT 80422 || |||||||| ||| |||||||| ||| |||| || || |||| || || || Sbjct 32120 GTGCCACCATAAATATGGCTGGCTACTTGGGCTATAATCTGTGCGGTTACAGCGGTGGCA 32061 Query 80423 ACACCAATTGAATTTGATGTTTCAATTTCAGCATTACCGAGTTTAAACCCATTTTGAAGC 80482 |||||| || | | ||||||||||||||| || | |||||| || || ||| Sbjct 32060 GTTGAAATTGATTTAGGCGGTTCAATTTCAGCATTTCCCATTTTAAAACCCTTGGTTAGC 32001 Query 80483 ATTCCGGCTAAATCTACTAAGCA-ACAGTTAGTAAACGGAAGCGATGGTGAATAATCCAT 80541 ||||| ||||||| | | |||| |||||| | || | | || | |||||||| Sbjct 32000 ATTCCATCTAAATC-AATTAGCATGCAGTTAAACATAGGGAAAAAGGGAGCATAATCCAG 31942 Query 80542 GTCATGAAAATGGAT 80556 |||||| |||| || Sbjct 31941 ATCATGATAATGAAT 31927 >seq916 Length=289624 Score = 109 bits (120), Expect = 6e-19 Identities = 71/77 (92%), Gaps = 1/77 (1%) Strand=Plus/Plus Query 103768 TGGTGGCCCCTGCTGGACTTGAACCAGCGACCAAGCGATTATGAGTCGCCTGCTCTAACC 103827 ||||||||||| ||||||||||||||| |||||| ||||||||||||| ||||||| ||| Sbjct 161546 TGGTGGCCCCTACTGGACTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTGACC 161605 Query 103828 -ACTGAGCTAAGGGGCC 103843 |||||||||||||||| Sbjct 161606 AACTGAGCTAAGGGGCC 161622 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505753654000760