Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_027353.1 Length=167063 Score E Sequences producing significant alignments: (Bits) Value seq2372 147 2e-30 seq2331 127 2e-24 seq3883 95.1 1e-14 seq1791 84.2 2e-11 >seq2372 Length=84335 Score = 147 bits (162), Expect = 2e-30 Identities = 311/462 (67%), Gaps = 14/462 (3%) Strand=Plus/Plus Query 140637 CATCAAATCATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 140696 ||| || | ||| | || || |||||||| | ||| || | ||| |||||||| | || Sbjct 73691 CATTAATTTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACC 73750 Query 140697 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 140756 |||||| | || | | ||||| ||||| |||||||| | |||||| | | Sbjct 73751 ACGGTTATTGCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATAC 73810 Query 140757 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATG 140816 || || || || || || | || || || || || ||||| ||||| || || || | Sbjct 73811 CGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTA 73870 Query 140817 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 140876 || |||| |||||| |||||||||| |||| || || ||| | ||| Sbjct 73871 CTTATAAAATGGAATACAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTAA 73930 Query 140877 GGCACGAATCATACCAACGTTAATACCAATTCCAGCACGTTTGGAGATATATTCAACAAT 140936 |||||| ||| |||| | ||||| ||||||||||| |||| || | |||| |||||| Sbjct 73931 GGCACGGATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAAT 73990 Query 140937 TG---AAGCGGAAGCCTT-ATTGA---TAGACTTTAATGAATCACCTGCCTCAATAACAA 140989 | |||| || || ||||| ||||| |||| | |||||| | | Sbjct 73991 AGCGCTCGCGGTGGCATTAATTGAGTCAAGACT-------ATCATCGCACTCAATCAATA 74043 Query 140990 CACATGAACTAAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATG 141049 |||| ||||||||||| ||||| ||||| || || |||||||| || || |||| | Sbjct 74044 CACACGAACTAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGG 74103 Query 141050 AAATCTGTCGAGTAGATACTGCTTCATAAAAACGGATAACGT 141091 |||| | || || | || ||||||||||| ||| || Sbjct 74104 AAATTTTAAAGGTGGAAATCGCATCATAAAAACGTTTAATGT 74145 >seq2331 Length=68774 Score = 127 bits (140), Expect = 2e-24 Identities = 135/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 61421 GTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61480 || || |||||||| |||||||| || || ||||| || || | || ||||| || || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 61481 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61540 |||||||| || ||||| || || | ||||| || ||||| || || ||||| || ||| Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 61541 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAATTTTAA 61598 || | ||||||||||| | || || || || | |||||| |||||||| | ||||| Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTCTACTTTAA 23818 >seq3883 Length=158444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 61421 GTGAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61480 || || || |||| || ||||| || || || ||| | ||||||||| || || Sbjct 116550 GTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACGTACG 116491 Query 61481 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61540 |||||||| || ||||| || || | || ||||| ||||| |||| | | ||||||| Sbjct 116490 GCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGCATCT 116431 Query 61541 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAA 61592 | ||||||||| | |||||||| || ||||| ||||||||||||| Sbjct 116430 AATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTCAA 116379 >seq1791 Length=77084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 69398 ATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-C 69456 |||||||||| | | ||||||||| | ||||||||| ||||||| ||||||||||| | Sbjct 16639 ATTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGC 16580 Query 69457 CATTATACGATATCCGCA 69474 ||||||||||| ||||| Sbjct 16579 CATTATACGATGCCCGCA 16562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534436460765720