Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_027356.1 Length=108065 Score E Sequences producing significant alignments: (Bits) Value seq1913 143 2e-29 seq3883 129 4e-25 seq2331 116 3e-21 >seq1913 Length=212763 Score = 143 bits (158), Expect = 2e-29 Identities = 419/637 (66%), Gaps = 24/637 (4%) Strand=Plus/Plus Query 44337 TGGCATGCTGAAGAATGGTACTAAAATTGGTAATGCAAATATTGAAACTCCTAAATCCAT 44396 ||| ||||| | || ||| |||||| || ||||| | |||||| | |||||||| || Sbjct 31995 TGGAATGCTAACCAAGGGTTTTAAAATGGGAAATGCTGAAATTGAACCGCCTAAATCAAT 32054 Query 44397 AACTACTGCGTGTGCAATCACTGCTCAGATTATTGCCCAAGTATCTGGTGCTCAGTATGG 44456 | ||||| || | || || |||||||| ||||||||| | | | ||||| Sbjct 32055 TTCAACTGCCACCGCTGTAACCGCACAGATTATAGCCCAAGTAGCCAGCCATATTTATGG 32114 Query 44457 TGGCACTTCTATTGATCGTATCGATGAGGTTCTAGCACCATATGT--CAGAAAGTCTTAC 44514 |||||| | ||| ||||||| ||||| ||||| || || ||| | ||||| || Sbjct 32115 TGGCACCACCATTAATCGTATTGATGAAGTTCTGGCTAAATTTGTATCGAAAAGT--TAT 32172 Query 44515 AATAAACACCTGGGTCGTG--GTCTACGT-TGGCTCAAGGATGAAA--GAAAAGCTGCTG 44569 | ||||| | ||||| | | | | |||| | ||| | ||||| Sbjct 32173 GAAAAACATC---GTCGTATAGCCGAAGAGTGGCAAATTCCTGATATCGAAAAC------ 32223 Query 44570 TGTACGCTACTGAGCTTACTGAAAAAGAGTGTTATGATGCATTCCAAGCCCTAGAGTATG 44629 ||||||| | ||||||||||||||||||||||||||| ||| | |||| |||| Sbjct 32224 --TACGCTAAGTCACGTACTGAAAAAGAGTGTTATGATGCATTTCAATCGTTAGAATATG 32281 Query 44630 AAACTAATTCATTATTTAACTCTAACGGACAGACTCCTTTTGTTACGCTTGGCTTTGGGC 44689 || ||| | || || | || |||||||| ||||||||||| |||| ||||| Sbjct 32282 AAGTCAATACGCTACATACTGCGAATGGACAGACCCCTTTTGTTACATTTGGATTTGGTT 32341 Query 44690 TAGGACAGGGGTGGGAGGAAAGGATGATTCAGAAAGCCATCCTCCAAAACCGTATTAAAG 44749 |||| | ||||| | | | ||||| || | ||| | | |||||| | Sbjct 32342 TAGGCACCAGTTGGGAATCACGCTTAATTCAAGAATCGATCTTACGTGTGCGTATTGTTG 32401 Query 44750 GTTTAGGTGCTGCTGAGTCAACCCCTATCTTCCCTAAACTAGTATTCTCAGTTAAAGAAG 44809 ||||||| | | ||| | | || |||||| |||| || | | ||||| | Sbjct 32402 GTTTAGGAAAAAATCATAAAACGGCAGTTTTTCCTAAATTAGTCTTTGCGATCAAAGATG 32461 Query 44810 GATTAAATAAAAATCCAGGCGATCCTAACTACGATATAAAACAGCTAGCACTTGAGTGTT 44869 | | ||| | || ||| |||| || || || ||||| ||||| | |||||| Sbjct 32462 GGGTTAATCATAAGCCAACAGATCAAAATTATACGATTAAACAATTAGCATTAGAGTGTG 32521 Query 44870 CTGCTACCCGTATGTACCCGGACTAT--TTAAGTTACGAGAAAGTTGTAGCTGTTACTGG 44927 | |||| || ||||| || || ||| |||| ||| || |||| || || || || Sbjct 32522 CCGCTAAACGAATGTATCCTGA-TATCCTTAA-TTATGATCAAGTGGTCAAGGTAACAGG 32579 Query 44928 TGATTTTAAAGCCCCTATGGGTTGTCGTAGTTTTTTA 44964 |||||| |||| ||||| ||||||||||| ||| Sbjct 32580 ATCATTTAAAACCCCAATGGGCTGTCGTAGTTTCTTA 32616 >seq3883 Length=158444 Score = 129 bits (142), Expect = 4e-25 Identities = 140/186 (75%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 24576 ATTACATCGCCTGAGTAAATGTACGACTAATAACATCGTTCTGCTGTTCACGCGTCAGTG 24635 ||||||| | |||||||| || ||| |||| || || || || || || || | | Sbjct 116564 ATTACATTGATTGAGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAG 116505 Query 24636 CGTTAAAACGTACAGCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGAT 24695 |||||||||||| || || || |||||||| ||||||||||| || || |||||||||| Sbjct 116504 AGTTAAAACGTACGGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGAT 116445 Query 24696 GTTTCTGTGCATCCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGTTGACCCC 24755 || | |||||| || | |||||| |||| || || ||||| ||||| ||||| | Sbjct 116444 TTTCCATTGCATCTAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCAC 116385 Query 24756 CTTCAA 24761 |||||| Sbjct 116384 CTTCAA 116379 >seq2331 Length=68774 Score = 116 bits (128), Expect = 3e-21 Identities = 130/172 (76%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 24590 GTAAATGTACGACTAATAACATCGTTCTGCTGTTCACGCGTCAGTGCGTTAAAACGTACA 24649 ||||| |||||| |||||| || || ||||| |||| | || |||||||| || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 24650 GCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGATGTTT--CTGTGCAT 24707 || || || |||||||| ||||||||||| ||||| |||||||| ||||| | | | | Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 24708 CCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGTTGACCCCCTTC 24759 | || | | ||||||| ||| ||||| ||||||| |||||| || ||||| Sbjct 23761 TCTAACGTT--TCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTC 23810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 345659779855174