Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_027364.1 Length=348113 Score E Sequences producing significant alignments: (Bits) Value seq2372 84.2 5e-11 seq1791 84.2 5e-11 >seq2372 Length=84335 Score = 84.2 bits (92), Expect = 5e-11 Identities = 124/176 (70%), Gaps = 0/176 (0%) Strand=Plus/Plus Query 257965 ATAATCTTAGCATTACCTTCCATTAGATTGTTTTCAGCAAACGCCCAAGAACACGCAAAG 258024 ||||| || ||||| |||||||||| | | ||| ||||| || | || || |||||| Sbjct 71648 ATAATTTTGGCATTTCCTTCCATTAATTCGCGTTCGGCAAAGGCAAACGAGCAGGCAAAG 71707 Query 258025 CTTGCATAAAAACGAACACCTTCAAGAATGTTAATACTATTCAGACACAACCAAAGTTTT 258084 || ||||||| |||| | ||||||| || | || | | ||| | |||||||| Sbjct 71708 CTAACATAAAATCGAATAGCTTCAAGCGCATTGACGCTCATTAAACAGAGATAAAGTTTT 71767 Query 258085 TTCTTTAGTTCGTACAAACTAATTTCAACTGTTTCACCATTGATTGTATGTGTCCC 258140 ||||||| ||| ||| |||| || |||| |||||| ||| ||| || || Sbjct 71768 TTCTTTAATTCACGCAAGTTAATGGTAATGGTTTTACCATTAATTTGATGGGTACC 71823 >seq1791 Length=77084 Score = 84.2 bits (92), Expect = 5e-11 Identities = 63/74 (85%), Gaps = 0/74 (0%) Strand=Plus/Minus Query 207837 GTGCCGACTACCGGAATCGAACTGGTGACCTTTCCCTTACAAGGGGATTGCTCTACCTAC 207896 |||||| |||||||||||||||||||||||| ||||||| ||||||||||||| Sbjct 16297 GTGCCGGCTACCGGAATCGAACTGGTGACCTACTGATTACAAGTCAGTTGCTCTACCTAC 16238 Query 207897 TGAGCTAAGTCGGC 207910 ||||||||| |||| Sbjct 16237 TGAGCTAAGCCGGC 16224 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1113751067777832