Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_027381.1 Length=68365 Score E Sequences producing significant alignments: (Bits) Value seq1288 118 5e-22 >seq1288 Length=52491 Score = 118 bits (130), Expect = 5e-22 Identities = 167/235 (71%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 8779 TTTTACCTCGTTCTGGGTTAGGGCATAAACATGGTATTGTGCTTGGAAATCTTACAGGTC 8838 |||||||||||||||| ||||| ||||||||||||||| | | ||| | |||| Sbjct 25574 TTTTACCTCGTTCTGGATTAGGCTCTAAACATGGTATTGTTTTAAGCAATTTGGTTGGTC 25633 Query 8839 TCATTGATAGTGATTATCAAGGGGAACTGATGGTAAGCCTCTGGAATCGCTCTACAAAGC 8898 | ||||| ||||||||||| |||| | ||| | |||||||| | | ||| Sbjct 25634 TTATTGACTCCGATTATCAAGGACAACTTTTTGTACCGATTTGGAATCGTAGTCAAGAGC 25693 Query 8899 CTTTTACTATTAATCCAGGTGACCGTATTGCTCAGTTAGTTATTGTGCCTGTAATGCAGC 8958 |||||||||| | || || || | ||||||||||| || ||||| ||||| | || Sbjct 25694 GTTTTACTATTGAACCTGGCGATAGAATTGCTCAGTTGGTGATTGTACCTGTTGTACAAG 25753 Query 8959 CTGAATTTGTTATAGTAGACTCTTTTGAAGCTACTGAAAGAGGCGAAGGTGGTTT 9013 || ||||| ||| || || ||| | |||||| | || ||||||||||| Sbjct 25754 CTCAATTTAATATTGTTGATGAGTTTACTACAACTGAACGCGGTGAAGGTGGTTT 25808 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 218628386854874