Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_027399.1 Length=346602 Score E Sequences producing significant alignments: (Bits) Value seq2372 145 2e-29 seq2331 131 4e-25 seq3883 123 6e-23 seq3995 91.5 3e-13 seq916 86.0 1e-11 >seq2372 Length=84335 Score = 145 bits (160), Expect = 2e-29 Identities = 323/468 (69%), Gaps = 24/468 (5%) Strand=Plus/Minus Query 128617 ATTCGTGATGGCGATGCAGTACATACTGGT-GTAGTACCATTCTTATCTGCATTAGCAAA 128675 || || | |||||| || | ||||||||| ||| | ||||| |||| | | | |||| Sbjct 73918 ATCCGCGGTGGCGAAGCGTTCCATACTGGTTGTATT-CCATT-TTATAAGTACTTCCAAA 73861 Query 128676 AA-CTGTCAAAAGCTGTTCCCAGGGAGGTGTAAGAGGCGGGGCAGCAACCGTACATTTTC 128734 | |||| ||| |||||| || || || ||| | || ||||| ||||| ||| || || Sbjct 73860 CAGCTGTGAAATCCTGTTCTCAAGGCGGGGTACGCGGGGGGGCGGCAACGGTATTTTATC 73801 Query 128735 CAATGTGGCATTTGGAATTTGAAAA--TATTGTAGTACTGAAAAATAATAAAGGAACTGA 128792 | | |||||||| ||| | ||||| ||||| || || ||||| || | ||| Sbjct 73800 CGTTATGGCATTTAGAAGTAGAAAACTTATTG--GTGCTACGCAATAACCGTGGTATTGA 73743 Query 128793 ATTTAACCGAGTAAGACAACTGGACTATTGCTTCCAAATCAATAAGACATTATATCAACG 128852 | || || || | || | || ||| | | ||||| ||||| | | || || || Sbjct 73742 AGAAAATCGCGTGCGCCATTTAGATTATGGGGTACAAATTAATAAATTAATGTACCAGCG 73683 Query 128853 ATTGATTGATGGAAAAGACATTACAT---TCTTTAGCCCACATGATGTTCCTGATCTATA 128909 || ||| | ||| || | || | | |||||||| |||||| |||||||| || Sbjct 73682 TTTAATTAA---AAACGAAAATATCTCGCTGTTTAGCCCTTCTGATGTCCCTGATCTGTA 73626 Query 128910 TGATGCATTTTGTGCTGATCAAGAAGAATTTGAACGTCTGTATATTAAGTATGAACTCGA 128969 || || || | ||| |||||||| |||||||||||||| ||| || | ||||||| ||| Sbjct 73625 TGCGGCTTTCTTTGCCGATCAAGACGAATTTGAACGTCTTTATCTTCACTATGAACACGA 73566 Query 128970 T-GAAACTATTCGTAGGAAAACTATGCC--AGCGATTGAAGC--ATTTAGTCATCTAATA 129024 | | ||| | || | || | | | | |||||||| ||| ||| | || |||| Sbjct 73565 TAGCAAC-ACACGCA--AACGCGAAGTCAAAGCGATTG-AGCTGTTTTCTTTAT-TAATG 73511 Query 129025 CAAGAGCGTGCAGAAACTGGCCGCATTTATATTCAGAATATTGATAAT 129072 ||||| || || ||| || || ||||||||||| ||||||||| || Sbjct 73510 CAAGAACGCGCCTCAACGGGACGTATTTATATTCAAAATATTGATCAT 73463 >seq2331 Length=68774 Score = 131 bits (144), Expect = 4e-25 Identities = 140/184 (76%), Gaps = 6/184 (3%) Strand=Plus/Minus Query 320415 AAAATTGAAGGTGGTCAACATTTAAATGTAAATGTATTATCACGTTCTCAA---TTAGAA 320471 ||| | |||||||| ||||| |||||||| ||||||||| ||| | || |||||| Sbjct 23816 AAAGTAGAAGGTGGACAACACTTAAATGTGAATGTATTA---CGTCGTGAAACGTTAGAA 23760 Query 320472 GAAGCACAGAAATTTCCTGAAAAATATCCTCAACTTACTATTCGTGTTTCTGGATATGCA 320531 || || ||| |||||||| || || ||| | ||||||||||||||||| ||||| Sbjct 23759 GACGCGGTTAAACACCCTGAAAACTACCCGCAATTAACTATTCGTGTTTCTGGTTATGCG 23700 Query 320532 GTTCGTTTTAATTCTCTTACGAAAGAACAACAAAATGATGTAATTTCACGAACTTTCACT 320591 || ||||||||||| | ||| |||||||||| ||| || ||| | || ||||| || Sbjct 23699 GTGCGTTTTAATTCATTAACGCCAGAACAACAACGTGACGTTATTGCTCGTACTTTTACA 23640 Query 320592 ACTA 320595 |||| Sbjct 23639 ACTA 23636 >seq3883 Length=158444 Score = 123 bits (136), Expect = 6e-23 Identities = 131/173 (76%), Gaps = 0/173 (0%) Strand=Plus/Plus Query 320419 TTGAAGGTGGTCAACATTTAAATGTAAATGTATTATCACGTTCTCAATTAGAAGAAGCAC 320478 ||||||||||||| || | ||||| || |||||| ||| |||| ||| ||| Sbjct 116379 TTGAAGGTGGTCAGCACCTTAATGTTAACGTATTAAATCGTGAAACATTATTAGATGCAA 116438 Query 320479 AGAAATTTCCTGAAAAATATCCTCAACTTACTATTCGTGTTTCTGGATATGCAGTTCGTT 320538 | || ||||||||| ||||| ||| | ||||||||||||||||| ||||| || |||| Sbjct 116439 TGGAAAATCCTGAAAAGTATCCACAATTAACTATTCGTGTTTCTGGTTATGCCGTACGTT 116498 Query 320539 TTAATTCTCTTACGAAAGAACAACAAAATGATGTAATTTCACGAACTTTCACT 320591 |||| ||| | || ||||| |||||||| || || ||| | || || || ||| Sbjct 116499 TTAACTCTTTAACTAAAGAGCAACAAAAAGACGTCATTACTCGGACGTTTACT 116551 >seq3995 Length=10512 Score = 91.5 bits (100), Expect = 3e-13 Identities = 65/75 (87%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 178958 TACGTCCCCTTAGTTCAGTTGGATAGAACAACTGCCTTCTAAGCAGTAGGTCACTGGTTC 179017 || ||| |||||| |||| |||||||| |||| ||||||||||| ||||||||| ||||| Sbjct 9033 TATGTCTCCTTAGCTCAGCTGGATAGAGCAACGGCCTTCTAAGCCGTAGGTCACAGGTTC 8974 Query 179018 GAGTCCAGTAGGGGA 179032 || ||| |||||||| Sbjct 8973 GAATCCTGTAGGGGA 8959 >seq916 Length=289624 Score = 86.0 bits (94), Expect = 1e-11 Identities = 233/349 (67%), Gaps = 6/349 (2%) Strand=Plus/Minus Query 48473 TGCTGGTACAAAATACCGTGGTGAATTCGAAGAACGTATGGAAGGTATTA-TTAAAGAAC 48531 |||||| || | ||| |||||||| || || || | || || | |||| ||| | Sbjct 203524 TGCTGGCACCACATATCGTGGTGATTTTGAGAAAAG-ATTCAATGAATTAGTTACTGTTT 203466 Query 48532 TTAAAAAACGAGAAAATGTAATTTTGTTCATTGATGAAGTACATATTATGATGGGTGCTG 48591 | | |||| ||||||| ||||| || |||||||| | || || || || || || | Sbjct 203465 TGGAGAAACAAGAAAATACGATTTTATTTATTGATGAGATTCACATGATTATCGGCGCGG 203406 Query 48592 GTGGTAGCAGCACTGGATCTATGGATATGAGCAATATCATGAAACCTGCACTTTCACGTG 48651 ||| | || | |||||| ||| || | || || | | ||| | Sbjct 203405 GTGCAACTGGCGAGAGTAAAGTGGATACCGCTAATCTCTTTAAGCCATTATTATCATCAG 203346 Query 48652 GTGATATTCGTGTTATCGGTGCAACAACTTATGAGGAATATCGCCAGAACATTGAAAAAG 48711 || ||||| ||||| || ||||||| ||| |||| | | | | | | ||||||||| Sbjct 203345 GTCGAATTCGCGTTATGGGCTCAACAACCTATCAGGAGTTTAGTCGAATCTTTGAAAAAG 203286 Query 48712 ATGCTGCATTTTCCCGCCGCTTCACTAAAATTGATGTAGTTGAACCTAGTATTAACGAAA 48771 || ||| || || | || ||| ||| ||||||| ||||||||| || | |||| Sbjct 203285 ATCATGCGTTAGCCAGACGTTTCCAAAAAGTTGATGTTATTGAACCTACATTTGATGAAA 203226 Query 48772 CACGTGAAATTA-TTAATGGTCTGAAAGGTACT-TATGAAAAATATCAT 48818 || || ||| || ||||||| || ||| || ||||||||||||||| Sbjct 203225 CA-GTAAAAATACTTAATGG-CTTAAAATCACGATATGAAAAATATCAT 203179 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1108916212163441