Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_027404.1 Length=167785 Score E Sequences producing significant alignments: (Bits) Value seq2372 161 1e-34 seq2331 132 5e-26 seq3883 95.1 1e-14 seq1791 84.2 2e-11 >seq2372 Length=84335 Score = 161 bits (178), Expect = 1e-34 Identities = 311/452 (69%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 138869 CATCAAATCATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 138928 ||| || | ||| | || || |||||||| | ||| || | ||| |||||||| | || Sbjct 73691 CATTAATTTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACC 73750 Query 138929 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 138988 |||||| | || | | ||||| ||||| |||||||| | |||||| | | Sbjct 73751 ACGGTTATTGCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATAC 73810 Query 138989 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAGCATGATTTAACAGCAGTCTGAAAATG 139048 || || || || || || | || || || || || ||||| ||||| || || || | Sbjct 73811 CGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTA 73870 Query 139049 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 139108 || |||| |||||| |||||||||| |||| || || ||| | ||| Sbjct 73871 CTTATAAAATGGAATACAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTAA 73930 Query 139109 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCAACAAT 139168 |||||| ||| |||| | ||||| |||||||||||||||| || | |||| |||||| Sbjct 73931 GGCACGGATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAAT 73990 Query 139169 TG---AAGCGGAAGCCTTATTGATAGACTTCAATGAATCTCCT-GC-CTCAATAACAACA 139223 | |||| || ||| || || |||| || | || | || |||||| | ||| Sbjct 73991 AGCGCTCGCGGTGGC---ATTAATTGA-GTCAA-GACTATCATCGCACTCAATCAATACA 74045 Query 139224 CATGAACTAAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAATGAA 139283 || ||||||||||| ||||| ||||| || || |||||||| || || |||| ||| Sbjct 74046 CACGAACTAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAA 74105 Query 139284 ATCTGTCGGGTTGATACCGCTTCATAAAAACG 139315 || | ||| || | ||| ||||||||||| Sbjct 74106 ATTTTAAAGGTGGAAATCGCATCATAAAAACG 74137 >seq2331 Length=68774 Score = 132 bits (146), Expect = 5e-26 Identities = 136/178 (76%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 61059 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61118 ||||| |||||||| |||||||| || || ||||| || || | || ||||| || || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 61119 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61178 |||||||| || ||||| || || | ||||| || ||||| || || ||||| || ||| Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 61179 TCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCTTCAATTTTAA 61236 || | ||||||||||| | || || || || | |||||| |||||||| | ||||| Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTCTACTTTAA 23818 >seq3883 Length=158444 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/172 (72%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 61059 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 61118 ||||| || |||| || ||||| || || || ||| | ||||||||| || || Sbjct 116550 GTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACGTACG 116491 Query 61119 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 61178 |||||||| || ||||| || || | || ||||| ||||| |||| | | ||||||| Sbjct 116490 GCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGCATCT 116431 Query 61179 TCCAGAGTTTCACGACGCAGAACGTTTACGTTCAGGTGTTGACCACCTTCAA 61230 | ||||||||| | ||||| || || ||||| ||||||||||||| Sbjct 116430 AATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTCAA 116379 >seq1791 Length=77084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 68832 ATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-C 68890 |||||||||| | | ||||||||| | ||||||||| ||||||| ||||||||||| | Sbjct 16639 ATTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGC 16580 Query 68891 CATTATACGATATCCGCA 68908 ||||||||||| ||||| Sbjct 16579 CATTATACGATGCCCGCA 16562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 536746700221800