Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq133 129 5e-25 seq107 123 2e-23 seq1274 104 2e-17 >seq133 Length=1210847 Score = 129 bits (142), Expect = 5e-25 Identities = 214/308 (69%), Gaps = 6/308 (2%) Strand=Plus/Plus Query 19216 CCAAATTGGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATC 19275 ||| ||||| | | || | ||| |||||| || || |||||| || || || Sbjct 802901 CCAGATTGGGACTTCCAAAAAATGGGAATTGGTGGTTTAGATAAAGAATTCAGTGCTATT 802960 Query 19276 TTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGT 19335 ||||| |||||||||| ||| || |||||| | |||| | ||| |||||||| ||| Sbjct 802961 TTTCGGAGAGCATTTGCGTCACGAGTTTTTCCACCAGAAATTGTTACTCAATTGGGCTGT 803020 Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 |||||||| ||| |||| |||||||| ||||| ||| || ||||| ||||| || Sbjct 803021 AAACATGTGAAAGGAATTTTACTTTATGGCCCACCAGGTACAGGTAAAACGTTAATGGCA 803080 Query 19396 AGAGAACT---TAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAA 19452 | || | | || ||| | | | | ||||| ||||| || ||||| ||| | Sbjct 803081 CGGCAAATAGGGACTATGTTAAATGCTAGAGAACCT---AAAATCGTCAATGGCCCTCAG 803137 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 || || |||||||||| || || |||| ||| | |||| || |||||||| ||| Sbjct 803138 ATTTTGGATAAATATGTTGGAGAAAGTGAAGCTAATATTAGACGATTATTTGCTGATGCT 803197 Query 19513 GAAGAAGA 19520 ||||| || Sbjct 803198 GAAGAGGA 803205 >seq107 Length=1190935 Score = 123 bits (136), Expect = 2e-23 Identities = 214/308 (69%), Gaps = 6/308 (2%) Strand=Plus/Minus Query 19216 CCAAATTGGAATGTGAAAGACATGCAAATTGGAGGATTGAGTAAAGAGTTTTCTGAAATC 19275 ||| ||||| | | || | ||| |||||| ||| || ||| || || || || Sbjct 218036 CCAGATTGGGACTTTCAAAAAATGGGAATTGGTGGACTGGATAATGAATTCAGTGCTATT 217977 Query 19276 TTTCGTAGAGCATTTGTGTCGCGTGTTTTTTCTGCAGATGTCATTAAACAATTGGGATGT 19335 ||||| |||||||| | ||| || |||||| | |||| | ||| ||| |||| ||| Sbjct 217976 TTTCGAAGAGCATTCGCGTCACGAGTTTTTCCGCCAGAAATTGTTACTCAACTGGGTTGT 217917 Query 19336 AAACATGTTCGTGGACTTTTGCTTTATGGGCCACCGGGTTGTGGAAAAACATTAATTGCG 19395 || || || ||| |||| |||||||| ||||| ||| || ||||| ||||| || Sbjct 217916 AAGCACGTAAAAGGAATTTTACTTTATGGTCCACCAGGTACAGGTAAAACGTTAATGGCA 217857 Query 19396 AG--AGA-ACTTAGTAAATTACTTACAAAACAACCTCCCAAAATTGTAAATGGTCCTGAA 19452 || ||| | | || ||| | | | | |||| |||||| || ||||| ||| | Sbjct 217856 AGGCAGATAGGAACTATGTTAAATGCTAGAGAACC---CAAAATCGTTAATGGCCCTCAG 217800 Query 19453 ATCTTAAATAAATATGTAGGTCAATCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCT 19512 || || |||||||||| || || |||| ||||| |||| || |||||||| ||| Sbjct 217799 ATTTTGGATAAATATGTTGGAGAAAGTGAAGCTAATGTTAGACGATTATTTGCTGATGCT 217740 Query 19513 GAAGAAGA 19520 |||||||| Sbjct 217739 GAAGAAGA 217732 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Minus Query 19612 GGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAATTAGACGGTGTTAACCAACTG 19671 ||||| ||||| ||||| || ||||| | || ||||| |||| ||||| | || | Sbjct 217056 GGAGTTCATGATACTGTCGTAAATCAGTTGCTCGCAAAAATAGATGGTGTGGAGCAGTTA 216997 Query 19672 AATAATATTTTAGTTATTGGCATGACTAATAGACTGGAATTAATAGACAGCGCCTTATTA 19731 ||||||||| | |||||||| ||||||||||||| || | || || || ||| || Sbjct 216996 AATAATATTCTTGTTATTGGTATGACTAATAGACGAGATATGATTGATGAAGCTTTACTA 216937 Query 19732 CGACCCGGTCGGTTGGA 19748 ||||| ||| | || || Sbjct 216936 CGACCTGGTAGATTAGA 216920 >seq1274 Length=440581 Score = 104 bits (114), Expect = 2e-17 Identities = 138/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 43829 GAAAAACATTTTATATCTTTGGTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAAT 43888 || |||||||| |||||| || || || || ||||| || || || || || ||| Sbjct 124638 GAGAAACATTTCATATCTCATGTCTTAGCATTCTTTGCGGCTTCTGATGGAATCGTTAAT 124579 Query 43889 GAAAATTTGGTTAGTCGGTTTGCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTAT 43948 || ||| | || || ||| || ||||| ||| || | || ||||| ||||| ||| Sbjct 124578 GAGAATCTTGTCGAACGATTTAGTCAGGAAGTACAAGTAACCGAGGCACGTTGTTTCTAT 124519 Query 43949 GGGTTTCAAATTGCCATAGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACG 44008 || |||||| | |||||||||||| | || || ||||||||| | |||| ||||| Sbjct 124518 GGTTTTCAAGTCGCCATAGAAAATGTGCACTCAGAAATGTACTCCATGTTGATTGATACA 124459 Query 44009 TACATCAAAGAT 44020 || |||| |||| Sbjct 124458 TATATCACAGAT 124447 Score = 93.3 bits (102), Expect = 3e-14 Identities = 93/121 (77%), Gaps = 0/121 (0%) Strand=Plus/Minus Query 43676 TTGCTTACAGAAAATCCGTCTAGGTTTGTCGTGTTTCCAATTCAATATCATGACATATGG 43735 || || | ||||||||| ||| || || || ||||| ||||||| | |||||| ||| Sbjct 124862 TTACTGAAAGAAAATCCACGTAGATTCGTTGTCTTTCCTATTCAATGGCCTGACATTTGG 124803 Query 43736 CAAATGTACAAAAAAGCACAGGCGTCATTTTGGACAGCAGAAGAAGTTGATTTGACTAAA 43795 |||||||| |||||||| | || ||||||||||| | || ||||| ||| | ||||| Sbjct 124802 CAAATGTATAAAAAAGCTGAAGCATCATTTTGGACTGTTGAGGAAGTGGATCTTTCTAAA 124743 Query 43796 G 43796 | Sbjct 124742 G 124742 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397429072231795