Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq503 131 1e-25 seq2682 118 9e-22 seq739 104 2e-17 seq418 104 2e-17 seq129 91.5 1e-13 >seq503 Length=216272 Score = 131 bits (144), Expect = 1e-25 Identities = 147/197 (75%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||||||||| ||||| || |||| ||||||| | |||||||| Sbjct 161832 GTCGATTCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCA 161773 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | | ||||||||| ||||| | ||| |||||||| |||||| || Sbjct 161772 GCGAAGATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTGAATCTTGGCCTTG 161713 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | |||||||| || |||||||| |||||||| | ||| || || || ||| Sbjct 161712 ACATTTTCAATAGTGTCTGAAGCCTCAACTTCCAGAGTTATCGTTTTTCCTGTAAGGGTT 161653 Query 27231 TTCACAAAGATTTGCAT 27247 || ||||| |||||||| Sbjct 161652 TTTACAAAAATTTGCAT 161636 Score = 127 bits (140), Expect = 2e-24 Identities = 147/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || |||||||||||||| ||||| || |||| ||||||| | |||||||| Sbjct 162060 GTCGATTCTTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCA 162001 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | | ||||||||| ||||| | ||| |||||||| |||||| || Sbjct 162000 GCGAAGATCAATCTCTGTTGATCTGGCGGAATACCTTCTTTATCCTGAATCTTGGCCTTA 161941 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | |||||||| || ||||||||||||||||| | ||| || || || || Sbjct 161940 ACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTC 161881 Query 27231 TTCACAAAGATTTGCATA 27248 || || || ||||||||| Sbjct 161880 TTGACGAAAATTTGCATA 161863 Score = 122 bits (134), Expect = 7e-23 Identities = 145/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||||||||| |||||| || |||| |||| || | |||||||| Sbjct 162752 GTTGACTCCTTTTGAATATTATAGTCGGACAGCGTGCGACCGTCCTCCAATTGTTTACCA 162693 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | | ||||||||| || || | ||| |||||||| |||||| || Sbjct 162692 GCGAAGATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTGAATCTTGGCCTTG 162633 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | |||||||| || || |||||||||||||| | ||| || || || ||| Sbjct 162632 ACATTTTCGATAGTGTCTGAAGCCTCCACTTCTAGAGTTATCGTTTTCCCAGTAAGGGTT 162573 Query 27231 TTCACAAAGATTTGCAT 27247 || ||||| |||||||| Sbjct 162572 TTTACAAAAATTTGCAT 162556 Score = 116 bits (128), Expect = 3e-21 Identities = 144/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||||||||| ||||| || |||| ||||||| | |||||||| Sbjct 160849 GTCGATTCCTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCA 160790 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | | ||||||||| || || | ||| |||||||| |||||| || Sbjct 160789 GCGAAGATCAATCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTGAATCTTGGCCTTG 160730 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | |||||||| || ||||||||||||||||| | ||| || || || || Sbjct 160729 ACATTTTCAATAGTGTCTGATGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTC 160670 Query 27231 TTCACAAAGATTTGCAT 27247 || || || |||||||| Sbjct 160669 TTGACGAAAATTTGCAT 160653 Score = 105 bits (116), Expect = 6e-18 Identities = 148/206 (72%), Gaps = 10/206 (5%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || ||||||||||| || | | ||| ||| | ||||| || |||||||| Sbjct 162524 GTCGATTCCTTCTGAATATTGTAATCTGATAGTGT-GCGTCCATCTTCCAGTTGTTTACC 162466 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCG--------GCACACCCTCTTTATCGGCGATC 27161 || |||| | | |||||||||||||| | | ||| |||||||| ||| Sbjct 162465 CGCAAAAATCAATCTCTGTTGATCCGGCGATCTGGCGGAATACCTTCTTTATCCTGAATC 162406 Query 27162 TTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCC 27221 ||| || | |||| | |||||||| || || |||||||||||||| | ||| || Sbjct 162405 TTGGCCTTGACATTTTCGATAGTGTCTGAAGCCTCCACTTCTAGAGTTATCGTTTTCCCA 162346 Query 27222 GTCAGAGTTTTCACAAAGATTTGCAT 27247 || || ||||| ||||| |||||||| Sbjct 162345 GTAAGGGTTTTTACAAAAATTTGCAT 162320 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 ||||| | || || | ||| | ||| | || || || ||||| |||||||| || Sbjct 160651 CCTCCTCTCAGACGAAGTACAAGATGCAGGGTTGATTCCTTTTGTATATTGTAATCAGAA 160592 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | ||||| | ||||| | |||||||| || | || | | |||||| || || || Sbjct 160591 AGTGTGCGCCCATCTTCCAATTGTTTACCAGCAAAGATCAACCTCTGTTGGTCTGGAGGA 160532 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| |||||||| ||||| ||||| | | || | || || | ||||||||| Sbjct 160531 ATACCTTCTTTATCTTGAATCTTTGCTTTCACGTTCTCAATTGTATCGGAAGCTTCAACT 160472 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || || || |||| ||| || ||||| || || || ||||| ||||| Sbjct 160471 TCAAGGGTGATAGTTTTTCCTGTCAGTGTCTTGACGAAGATCTGCAT 160425 Score = 95.1 bits (104), Expect = 1e-14 Identities = 142/199 (71%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTC-GCTCATGTTGCGCTCGTCTTCGAGCTGTTTACC 27109 || || || || ||||| ||||| || | | ||| ||| | ||||| || |||||||| Sbjct 161077 GTTGATTCCTTCTGAATGTTGTAATCTGATAGTGT-GCGTCCATCTTCCAGTTGTTTACC 161019 Query 27110 GGCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTT 27169 || |||| | | ||||||||| ||||| | || || ||||| || || ||| Sbjct 161018 CGCAAAAATCAATCTCTGTTGATCTGGCGGAATTCCTTCCTTATCTTGAATTTTTGCTTT 160959 Query 27170 CAGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGT 27229 | |||||| ||||| | ||||||||||| || || |||| ||| || || || || Sbjct 160958 TACATTTTCTATCGTGTCGGAAGCTTCAACTTCAAGTGTGATAGTTTTTCCTGTAAGGGT 160899 Query 27230 TTTCACAAAGATTTGCATA 27248 ||||| || ||||||||| Sbjct 160898 CTTCACGAAAATTTGCATA 160880 >seq2682 Length=416 Score = 118 bits (130), Expect = 9e-22 Identities = 145/198 (73%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 27051 GTAGAGTCTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCG 27110 || || || ||||||||||| ||||| || |||| ||||||| | |||||||| Sbjct 124 GTCGATTCCTTTTGAATATTATAGTCTGACAGCGTGCGTCCGTCTTCCAATTGTTTACCA 183 Query 27111 GCGTAAATGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTC 27170 ||| | || | | ||||||||| || || | ||| |||||||| |||||| || Sbjct 184 GCGAAGATCACTCTCTGTTGATCGGGTGGAATACCTTCTTTATCCTGAATCTTGGCCTTG 243 Query 27171 AGGGTTTCTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTT 27230 | |||| | |||||||| || ||||||||||||||||| | ||| || || || || Sbjct 244 ACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAGAGTTATCGTTTTTCCTGTAAGGGTC 303 Query 27231 TTCACAAAGATTTGCATA 27248 || || || ||||||||| Sbjct 304 TTGACGAAAATTTGCATA 321 >seq739 Length=1399493 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | | |||||| ||||| | ||| || ||||| ||||| || || || Sbjct 7030 CCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAA 6971 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||| |||||||| || || | || | |||||| || || || || Sbjct 6970 AGAGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 6911 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||| ||||| || |||||| ||||| | |||| ||||| | ||||||||| Sbjct 6910 ATACCTTCTTTGTCTTGGATCTTAGCTTTCACATTCTCTATTGTGTCAGAAGCTTCAACT 6851 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || ||||| |||| ||| || || | || || || ||||| ||||| Sbjct 6850 TCAAGAGTAATAGTTTTCCCTGTTAAGGTCTTAACGAAGATCTGCAT 6804 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 |||||||| | | |||||| ||||| | ||| || ||||| ||||| || || || Sbjct 7258 CCTCCGCGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAA 7199 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | | | ||||| || ||||| || || | || | |||||| || || || || Sbjct 7198 AGAGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGA 7139 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||||||| || || || || | | |||| ||||| | ||||||||| Sbjct 7138 ATACCCTCTTTGTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACT 7079 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCAT 27247 || | || || | ||| || || || ||||| |||||||| ||||| Sbjct 7078 TCCAAGGTAATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCAT 7032 >seq418 Length=3833963 Score = 104 bits (114), Expect = 2e-17 Identities = 180/262 (69%), Gaps = 0/262 (0%) Strand=Plus/Minus Query 131225 TCAATTATTTTGTTTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAA 131284 || || ||||||| |||||| | ||||||| ||| || || || ||| || ||| Sbjct 2669442 TCGATAATTTTGTCTAAATTACAAGTAACAATTTTTGTTACTTTTCGCAGTTTTTCAAAA 2669383 Query 131285 TCAAACGTGCCAGTTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAA 131344 ||||| || | | | ||||||||| || || ||||| || | ||| || Sbjct 2669382 TCAAATGTCTGATTACTGGAGTTTACAAACATGTTCACTGCGATTGAAGCTAAATTGCAT 2669323 Query 131345 ACTGCCGTTTCGTCATAATCGCAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTT 131404 || || |||| || | | |||| || || ||||| | |||||||||||||| || Sbjct 2669322 ACAGCGATTTCATCTGGACTGGAATATTGTACGATTTCTGTACACAAATTACTGCTTTTG 2669263 Query 131405 ATGGTGCCCAAATTTTGTTGATTGCTTTTAGCATTCACATGGTCCTTGTACATCATGTAG 131464 || || || |||||||| ||||| |||| ||| ||| || || || | |||||| Sbjct 2669262 ATTGTCCCTAAATTTTGATGATTTGATTTACGATTACAATGATCTTTATAAAGCATGTAA 2669203 Query 131465 GGCGTGCCCGTTTCGACTTGAG 131486 || || || ||||| ||||||| Sbjct 2669202 GGAGTTCCTGTTTCAACTTGAG 2669181 Score = 86.0 bits (94), Expect = 5e-12 Identities = 166/242 (69%), Gaps = 5/242 (2%) Strand=Plus/Minus Query 130733 AGATCTTTTACCAAATGATTATTAATGATTTGAAAATCACCAGCCAGGACGCGTCTAACG 130792 |||||| || |||||| ||| | || |||||| || |||| || || | ||| | Sbjct 2670118 AGATCTCGTAATAAATGAGGATTTACGACTTGAAACTCTCCAGACAAAACTCTTCTTGCA 2670059 Query 130793 TAAATGTTGCTCGTGAACGGTTCAAAGGATTCGTTGTTGCCGAATATTTGTGCTGTAGTT 130852 ||||| || || || | ||||| | ||||| || || || || |||||||| |||| | Sbjct 2670058 TAAATATTACTGGTATATGGTTCTATAGATTCATTATTTCCTAAGATTTGTGCAGTAGAT 2669999 Query 130853 GCGGTGGGCATGTATGCCACTAATAGAGAATTACGAAGACCGTGCGTCGTGATTTTTCGC 130912 || || ||||| || | ||||| |||||| | || || || | | |||||| Sbjct 2669998 GCCGTTGGCATAGGGGCGATTAATAAAGAATTTCTAACTCCATGTTTAGCAATTTTTTCT 2669939 Query 130913 TTCA-ATTCATCCCAATCCCATAGAGAGGTAGGTTTGACATTGTTCCACATATCAAATTG 130971 |||| | | ||| | | ||||| | || || | ||||| |||||||||| |||| Sbjct 2669938 TTCAGAATTGTCC-AGTTCCATAAATTAGTTGGAGTAACATT---CCACATATCATATTG 2669883 Query 130972 TA 130973 || Sbjct 2669882 TA 2669881 >seq129 Length=1828789 Score = 91.5 bits (100), Expect = 1e-13 Identities = 134/190 (71%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 27058 CTTTTTGAATATTGTAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAA 27117 ||||||||||||| || || || | || | ||||| | || || || || ||| Sbjct 1158785 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1158726 Query 27118 TGAGACGCTGTTGATCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTT 27177 | ||||| || ||||| || || | || |||||||| ||| || ||| | ||| Sbjct 1158725 TAAGACGTTGCTGATCAGGTGGAATTCCTTCTTTATCCTGGATTTTAGCTTTTACATTTT 1158666 Query 27178 CTACAGTGTCTGTGGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAA 27237 | | ||| |||| ||||| ||||| || || || | ||| || |||| ||||||||||| Sbjct 1158665 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1158606 Query 27238 AGATTTGCAT 27247 | || ||||| Sbjct 1158605 ATATCTGCAT 1158596 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424905610561608