Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_027983.1 Length=167435 Score E Sequences producing significant alignments: (Bits) Value seq2372 147 2e-30 seq1913 127 2e-24 seq3883 96.9 4e-15 seq1791 84.2 2e-11 >seq2372 Length=84335 Score = 147 bits (162), Expect = 2e-30 Identities = 306/454 (67%), Gaps = 14/454 (3%) Strand=Plus/Plus Query 139889 CATCAAATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 139948 ||| || | ||| | ||| || |||||||| | ||| || | ||| |||||||| | || Sbjct 73691 CATTAATTTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACC 73750 Query 139949 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 140008 |||||| | || | | ||||| ||||| |||||||| | |||||| | | Sbjct 73751 ACGGTTATTGCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATAC 73810 Query 140009 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 140068 || || || || || || | || || || ||||| ||||| || || || || || | Sbjct 73811 CGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTA 73870 Query 140069 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 140128 || |||| |||||| |||||||||| |||| || || ||| | ||| Sbjct 73871 CTTATAAAATGGAATACAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTAA 73930 Query 140129 GGCACGAATCATACCAACGTTAATACCAATTCCAGCGCGTTTAGAGATATATTCTACAAT 140188 |||||| ||| |||| | ||||| |||||||||||||||| || | |||| ||||| Sbjct 73931 GGCACGGATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAAT 73990 Query 140189 CG---AAGCGGAAGCCTT-ATTGA---TAGACTTTAATGAATCACCTGCCTCAATAACAA 140241 | |||| || || ||||| ||||| |||| | |||||| | | Sbjct 73991 AGCGCTCGCGGTGGCATTAATTGAGTCAAGACT-------ATCATCGCACTCAATCAATA 74043 Query 140242 CACATGAACTAAACTGTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATG 140301 |||| ||||||||||| ||||| ||||| || || |||||||| || || || | | Sbjct 74044 CACACGAACTAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGG 74103 Query 140302 AAATCTGTCGAGTAGATACTGCTTCATAAAAACG 140335 |||| | || || | || ||||||||||| Sbjct 74104 AAATTTTAAAGGTGGAAATCGCATCATAAAAACG 74137 Score = 91.5 bits (100), Expect = 2e-13 Identities = 143/197 (73%), Gaps = 11/197 (6%) Strand=Plus/Plus Query 137807 AATAATATATTGGGTGCCTTTAAGGTGAAGCTGTTCATCGCGTGCAATGAACTTCATAAT 137866 ||| ||| |||| || || |||||||||| ||||||||| ||||| | || ||||| Sbjct 71593 AATCATAAATTGAGTACCGGTAAGGTGAAGAGCTTCATCGCGGGCAATCAGTTTAATAAT 71652 Query 137867 CTTGGCATTACCTTCCATGATTTCCATGTTCTTATGG--AAGTTAAAGGTACATGCGAAA 137924 |||||||| |||||||| | ||| |||| || ||| ||| | || || ||| Sbjct 71653 TTTGGCATTTCCTTCCATTAATTCGC-GTTC----GGCAAAGGCAAACGAGCAGGC-AAA 71706 Query 137925 GATA-CATAAAAACGAATAGCTTCCAATGCGTTGA-TTACATGCAAACAGAGGTAAAGAG 137982 | || ||||||| ||||||||||| | || |||| ||| |||||||| ||||| Sbjct 71707 GCTAACATAAAATCGAATAGCTTCAAGCGCATTGACGCTCAT-TAAACAGAGATAAAGTT 71765 Query 137983 ATTTCATTAGCTCACGC 137999 |||| ||| |||||| Sbjct 71766 TTTTCTTTAATTCACGC 71782 >seq1913 Length=212763 Score = 127 bits (140), Expect = 2e-24 Identities = 624/969 (64%), Gaps = 38/969 (4%) Strand=Plus/Minus Query 41451 GCGATACGAGGAAGATTCAGTGTTACAACACCAAGATTATTACGTCCATCAAGAATTTCA 41510 || |||||||||| ||| | | | || || | ||||||||| |||||| |||||| Sbjct 32699 GCAATACGAGGAATATTTAAACTAATTACCCCTAAATTATTACGCCCATCATGAATTTGC 32640 Query 41511 TTACCAGTCGAATCTTTCCATACGCTCAAGAAACTGCGGCAACCCATTGGAGAAACAGGA 41570 | ||| || |||| | || | |||||||| || || |||||||| | Sbjct 32639 TGCCCA-TCT--TCTTCATAAACACCTAAGAAACTACGACAGCCCATTGGGGTTT----- 32588 Query 41571 ATAGATGAGCCGGTGATAGCTTTA----TTGTTCTTAGCTGAAATAATATCAGGATACAT 41626 || |||| || || || ||| | ||| || || | || |||||||||||||| Sbjct 32587 -TAAATGATCCTGT--TACCTTGACCACTTGATCATAATT--AAGGATATCAGGATACAT 32533 Query 41627 CCTTTTGCTTGCGCACTCTAGAGCAAGCTGCTTAATATCATAGTTCGGATCGTCTTTG-T 41685 | ||| || ||||||| || | || ||||| ||| || |||| | || | | Sbjct 32532 TCGTTTAGCGGCACACTCTAATGCTAATTGTTTAATCGTATAATTTTGATC-TGTTGGCT 32474 Query 41686 AAAGATTAACGCCTTCTTCGA-CGAACATAACAAGCTTAGGAAAAATAGGAGTTATCCCG 41744 | ||||||| || |||| || || | | | || |||||||||| | ||| | Sbjct 32473 TATGATTAACCCCATCTTTGATCGCAAAGACTAAT-TTAGGAAAAACTGCCGTTTTATGA 32415 Query 41745 TCACGACCGAGACCTTTAATACG-ATTTTTCAGAATTGCTTTCTGAATCATTCGTTCAGT 41803 | || | ||| |||||| | | ||| | | || ||||| | ||| Sbjct 32414 TTTTTTCCTAAACCAACAATACGCACACGTAAGA-TCGATTCTTGAATTAAGCGTGATTC 32356 Query 41804 CCAGTCAGTTCCTGTACCAAATGTAATTGTTACAAAAGGTGTTTGTCCGTTTGAACTAAA 41863 ||| || ||| ||||||| || ||| |||||||| || ||||| || | | || Sbjct 32355 CCAACTGGTGCCTAAACCAAATCCAAATGTAACAAAAGGGGTCTGTCCATTCGCAGTATG 32296 Query 41864 GAGAGTATTTACTTCATATTCATAAGCTTGGAATGCATCGTATACA-TCTTTTTCTGTTT 41922 || ||||| ||||||||||| | | ||| |||||||| || ||| |||||||| || Sbjct 32295 TAGCGTATTGACTTCATATTCTAACGATTGAAATGCATCATA-ACACTCTTTTTCAGTAC 32237 Query 41923 TAGATTGAGCATAATTCAACGCATCAGCGATTTGCCATTTTTCTGC-ATCCTCAATATGT 41981 || | ||| || || ||||| |||||||| | ||| || || | | |||| Sbjct 32236 GTGACTTAGCGTAGTTTTCGATATCAGGAATTTGCCACTCTTCGGCTATAC-GACGATGT 32178 Query 41982 TTTGCATA--GGTGCGTTTAACATAAGGAGAAAGTACTTTATCTACATTAGCAAAAGTCG 42039 ||| |||| | || | ||| | || || |||| ||| | | | || || | Sbjct 32177 TTTTCATAACTTTTCGAT--ACAAATTTAGCCAGAACTTCATCAATACGATTAATGGTGG 32120 Query 42040 TTCCGCCGTATTGATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAATTGCAGTAGCAA 42099 | || || || |||| || || || || |||| ||||| | | || || ||| Sbjct 32119 TGCCACCATAAATATGGCTGGCTACTTGGGCTATAATCTGTGCGGTTACAGCGGTGGCAG 32060 Query 42100 CTCCAATTGATTTAGGAGTTTCAATCTGTGCATTACCAAGCTTAAATCCGTTCTCAAGCA 42159 | |||||||||||| | |||||| | ||||| || | ||||| || || |||| Sbjct 32059 TTGAAATTGATTTAGGCGGTTCAATTTCAGCATTTCCCATTTTAAAACCCTTGGTTAGCA 32000 Query 42160 TTCCTTTTAAATCTACTAAACAACAATT-AGTAAATGGAAGAGCAGGG-GAATAATCAAT 42217 |||| | |||||| | || || || | | | |||| | |||| | |||||| | Sbjct 31999 TTCCATCTAAATCAATTAGCATGCAGTTAAACATAGGGAAAA--AGGGAGCATAATCCAG 31942 Query 42218 ATCATGGAAATGAATAATTCCGCTTTCATGCGCTTTCATAATAAAAGACGGGACCATATT 42277 |||||| ||||||| || | |||||||| | ||| || | |||| Sbjct 31941 ATCATGATAATGAATTTCACCACGATCATGCGCAATAGAAATTTCTTTAGGTAAGATATA 31882 Query 42278 T---TTGGCAATGTGTTTAGACACAATACCGGCCATAAGGTCCCGTTGAGTTGGAAAAAC 42334 | || ||| ||||||| || ||||| || | | || || ||||| |||| ||| Sbjct 31881 TTGCTTAGCATAATGTTTAGCAACGATACCTGCTAATAAATCGCGCTGAGTAGGAATAAC 31822 Query 42335 ACGAGAATCTTTATTAGCATTCTCGTTTAAAAGGTCTTTATTAGTTTTATGAATCAATCC 42394 | ||||||||||||||| ||||| |||| | ||||| ||| | ||| || || Sbjct 31821 TTTACTATCTTTATTAGCATTTTCGTTCAAAATTGCCATATTACTTTGTTCAATTAACCC 31762 Query 42395 TTCAATTTC 42403 || ||| || Sbjct 31761 TTTAATCTC 31753 >seq3883 Length=158444 Score = 96.9 bits (106), Expect = 4e-15 Identities = 125/173 (72%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 60778 AGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 60837 |||||| || |||| || ||||| || || || ||| | ||||||||| || || Sbjct 116551 AGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACGTAC 116492 Query 60838 TGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 60897 |||||||| || ||||| || || | || ||||| ||||| |||| | | |||||| Sbjct 116491 GGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGCATC 116432 Query 60898 TTCCAGAGTTTCGCGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAA 60950 | | ||||| ||| | |||||||| || ||||| ||||||||||||| Sbjct 116431 TAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTCAA 116379 >seq1791 Length=77084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 69683 ATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-C 69741 |||||||||| | | ||||||||| | ||||||||| ||||||| ||||||||||| | Sbjct 16639 ATTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGC 16580 Query 69742 CATTATACGATATCCGCA 69759 ||||||||||| ||||| Sbjct 16579 CATTATACGATGCCCGCA 16562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535626778047800