Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_027995.1 Length=41666 Score E Sequences producing significant alignments: (Bits) Value seq1913 104 6e-18 >seq1913 Length=212763 Score = 104 bits (114), Expect = 6e-18 Identities = 185/270 (69%), Gaps = 0/270 (0%) Strand=Plus/Minus Query 41190 GGCAACTTAGGCAACGATCCAGAAATCCGTTACATGCCAAGCGGCGGCGCGGTTGCTAAT 41249 || || ||||| | ||||||||| | ||||| | || | || ||||| || | | Sbjct 142623 GGTAATTTAGGACAAGATCCAGAAGTGCGTTATTTACCGAATGGTGGCGCAGTGACCACC 142564 Query 41250 CTAAGCATCGCCACAACTGAAAGCTGGAAGGATAAAACCACCGGCGAGAAGAAAGAACAA 41309 | || | || || | || | ||||| ||||| ||||||||| |||||||| Sbjct 142563 ATTAGTGTTGCGACGTCGGAGACGTGGAAAGATAAGCAAACCGGCGAGCCGAAAGAACGC 142504 Query 41310 ACGGAATGGCACCGCGTTGTCATCTTCGGTAAGCTGGCAGAAATTGCTAGCGAATACCTG 41369 || ||||||||||||||||| || || ||| | |||||||||||| | |||||| | Sbjct 142503 ACTGAATGGCACCGCGTTGTTATTTTTGGTCGATTAGCAGAAATTGCTGGTGAATACTTA 142444 Query 41370 CGCAAAGGTAGCAAGGTGTTCATTGAAGGCAGCCTGCGAACGCGTAAATGGCAGGACCAG 41429 ||| ||| | || | |||||||| | | ||| || ||||||||||| || Sbjct 142443 CGCCGTGGTTCACAAGTTTATATTGAAGGTGCTTTACAAACCCGCAAATGGCAGGATCAA 142384 Query 41430 GCTGGCGTTGATCGCTACACCACTGAAATC 41459 |||| |||||||| || || ||| || Sbjct 142383 ACTGGTCAAGATCGCTATACGACGGAAGTC 142354 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 133200806418024