Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq3761 129 7e-25 seq418 95.1 1e-14 >seq3761 Length=42113 Score = 129 bits (142), Expect = 7e-25 Identities = 255/371 (69%), Gaps = 10/371 (3%) Strand=Plus/Minus Query 9523 ACGATCAAAGCGACCTGGACGAAGGAGCGCGTCATCAAGGATATCAACGCGATTCGTCGC 9582 ||||||||| || |||||||| | | || ||| || | |||||| || || || || Sbjct 23959 ACGATCAAAACGTCCTGGACGTAATAATGCTGGATCTAGCACATCAACACGGTTAGTTGC 23900 Query 9583 GGCGATGACAACAATACC--TGTTTCATTATCAAAACCATCCATCTCTGTCAAAAGTTGG 9640 || || | || |||||| ||||| ||| |||| |||||||| || | | |||| Sbjct 23899 AGCAATAATAATAATACCACTGTTTGATT--CAAACCCATCCATTTCGACTAGCATTTGG 23842 Query 9641 TTAATAGTTTGTTCCCGTTCATCATT--CGCTGGCATACCACCAGCACTGCGTTGCTTTC 9698 || | ||||| || |||||||||| | | | | | ||| | | |||| || Sbjct 23841 TTTAAGGTTTGCTCGCGTTCATCATGACCACCAGAAAA--ACCGCCTCCCCGTTTTCGTC 23784 Query 9699 CCACGGCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTCAA 9758 | ||||||||||| |||||||| || | || || || || || || || ||| Sbjct 23783 CAACGGCATCAATTTCATCAATAAAAATAATACACGGCGCATGTTTACGTGCTTGAGCAA 23724 Query 9759 AGAGATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGG 9818 | | ||| ||||| || ||| || |||||||||||||| || ||||| | | | | Sbjct 23723 ACATATCACGTACTCGAGAGGCCCCTACACCAACAAACATTTCAACAAAATCAGAACCTG 23664 Query 9819 AACATTG-GATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTA 9877 || || | | ||| || ||||| | |||||| ||||||||| || | || || ||| Sbjct 23663 AA-ATCGTAAAGAAAGGAACATTTGCTTCACCAGCAATGGCTTTAGCCAATAGGGTTTTA 23605 Query 9878 CCCGTACCTGG 9888 ||||||||||| Sbjct 23604 CCCGTACCTGG 23594 >seq418 Length=3833963 Score = 95.1 bits (104), Expect = 1e-14 Identities = 209/308 (68%), Gaps = 4/308 (1%) Strand=Plus/Plus Query 104882 GATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATACATGCTTTAC 104941 ||| | |||| ||||||||| |||||| || || || || || ||||||||||| Sbjct 2669156 GATTTATGGACAGCTATTCTTGTTTCTCAAGTTGAAACAGGAACTCCTTACATGCTTTAT 2669215 Query 104942 AAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAGAGTTCCAAT 105001 ||||| ||||| | || ||||| | ||||| || ||||| || ||| Sbjct 2669216 AAAGATCATTGTAATCGTAAATCAAATCATCAAAATTTAGGGACAATCAAAAGCAGTAAT 2669275 Query 105002 CTCTGTACAGAAATCTTGGAAT-TTACAGACAAAGATGAGACGGCTGTGTGTAACCTCGC 105060 | |||||||||||| | ||| || ||| | |||||| | ||||| || || | || Sbjct 2669276 TTGTGTACAGAAATCGTACAATATTCCAGTC-CAGATGAAATCGCTGTATGCAATTTAGC 2669334 Query 105061 ATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGATTATGAAAAAC 105119 |||||||| | || || ||| | ||||| | |||||||||||| |||||||| Sbjct 2669335 TTCAATCGCAGTGAACATGTTTGTAAACTCCAG-TAATCAGACATTTGATTTTGAAAAAC 2669393 Query 105120 TCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATAGAAATTTTT 105179 | | |||| || |||| ||| || || || ||| | |||| ||| |||| || Sbjct 2669394 TGCGAAAAGTAACAAAAATTGTTACTTGTAATTTAGACAAAATTATCGATGTGAATTATT 2669453 Query 105180 ACCCCGTT 105187 | || ||| Sbjct 2669454 ATCCGGTT 2669461 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583220270665160