Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq739 170 2e-37 seq503 154 2e-32 seq2682 145 9e-30 seq129 127 2e-24 >seq739 Length=1399493 Score = 170 bits (188), Expect = 2e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| || || ||||| || || || ||||| | || ||||| || Sbjct 7031 AATGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATTACCTTGGAAGTTGAAGCATC 7090 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | ||| | |||||||||||||||||||| ||||| |||||||||||||| Sbjct 7091 TGACACAATAGAGAATGTTAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCA 7150 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| | || |||||||| || ||||| || |||| | || || |||| ||||| Sbjct 7151 GCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 7210 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || || || ||||| || ||| |||| ||| | |||||||| ||| Sbjct 7211 CATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGA 7259 Score = 161 bits (178), Expect = 1e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||||||||| || ||||| || || || ||||| | || || || | Sbjct 7487 AATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTC 7546 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | ||| |||||||||| || || ||||| ||||| |||||||||||||| Sbjct 7547 TGACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCA 7606 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| | || |||||||| || ||||| || |||| | || || |||| ||||| Sbjct 7607 GCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 7666 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || || ||||| || ||| |||| ||| | |||||||| ||| Sbjct 7667 CATCCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGA 7715 Score = 161 bits (178), Expect = 1e-34 Identities = 173/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| |||||||| || || ||||| || || || || || | || ||||| || Sbjct 7973 AATGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATCACCTTGGAAGTTGAAGCATC 8032 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | ||| | |||||||||||||||||||| ||||| |||||||||||||| Sbjct 8033 TGACACAATAGAGAATGTTAAGGCTAAAATTCAGGACAAAGAGGGTATTCCTCCAGACCA 8092 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| | || |||||||| || || || || |||| | || || |||| ||||| Sbjct 8093 GCAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTTTCAGATTATAA 8152 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || || ||||| || ||| |||| ||| | ||||| || ||| Sbjct 8153 CATCCAGAAAGAGTCCACACTCCATTTAGTATTGAGACTTCGTGGAGGA 8201 Score = 156 bits (172), Expect = 5e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||||||||| || ||||| || || || ||||| | || || || | Sbjct 7259 AATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTC 7318 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | ||| |||||||||| || || ||||| ||||| |||||||||||||| Sbjct 7319 TGACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCA 7378 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| | || |||||||| || ||||| || |||| | || || |||| ||||| Sbjct 7379 GCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 7438 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || || || ||||| || ||| |||| ||| | |||||||| ||| Sbjct 7439 CATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGA 7487 Score = 156 bits (172), Expect = 5e-33 Identities = 172/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 |||||| ||||||||||| || ||||| || || || ||||| | || || || | Sbjct 7715 AATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTC 7774 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 ||| | || | ||| |||||||||| || || ||||| ||||| |||||||||||||| Sbjct 7775 TGACACAATAGAGAATGTGAAGGCTAAGATCCAAGACAAAGAGGGTATTCCTCCAGACCA 7834 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||||||| | || |||||||| || ||||| || |||| | || || |||| ||||| Sbjct 7835 GCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATAA 7894 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| || || ||||| || ||| |||| ||| | ||||| || ||| Sbjct 7895 CATCCAGAAAGAGTCCACACTCCATTTAGTATTGAGACTTCGTGGAGGA 7943 Score = 150 bits (166), Expect = 2e-31 Identities = 170/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| || ||||| | || || || |||||||||||||| ||||| | | Sbjct 6804 ATGCAGATCTTCGTTAAGACCTTAACAGGGAAAACTATTACTCTTGAAGTTGAAGCTTCT 6863 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| |||| ||||| || || ||||| || || ||||||||||||||| Sbjct 6864 GACACAATAGAGAATGTGAAAGCTAAGATCCAAGACAAAGAAGGTATTCCTCCAGACCAG 6923 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||| | || |||||||| || || || || |||| | || || |||| ||||| Sbjct 6924 CAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTTTCAGATTATAAC 6983 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 | || || || ||||| || ||| |||| ||| | |||||||| ||| Sbjct 6984 ATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGA 7031 >seq503 Length=216272 Score = 154 bits (170), Expect = 2e-32 Identities = 171/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| || |||||||| ||||| || || || || ||||| || |||||| || Sbjct 160652 AATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCATC 160711 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| |||| | ||||| || |||||||| || || || ||||| || || || Sbjct 160712 AGACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCA 160771 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | | || || |||||||| ||| | || || | || || || |||||||||| Sbjct 160772 ACAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAA 160831 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | ||||||||||| |||||||| || || | || ||||| ||||| Sbjct 160832 TATTCAAAAGGAATCGACTCTTCACCTTGTTCTTCGCCTTCGTGGTGG 160879 Score = 149 bits (164), Expect = 7e-31 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| ||||| || || || || ||||| || |||||| | Sbjct 161864 ATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCTTCA 161923 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||||| || |||||||| || || || ||||| ||||| || Sbjct 161924 GACACTATTGAAAATGTTAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCAA 161983 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || |||||||| ||| | || || | || || || ||||||||||| Sbjct 161984 CAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAAT 162043 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | ||||| ||||| |||||||| || || | || ||||| ||||| Sbjct 162044 ATTCAAAAAGAATCGACTCTTCACCTTGTTCTTCGCCTTCGTGGTGG 162090 Score = 145 bits (160), Expect = 9e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || || ||||| || || || || ||||| || |||||| | Sbjct 161635 AATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACGATAACTCTGGAAGTTGAGGCTTC 161694 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | |||| |||| | ||||| || |||||||| || || || ||||| ||||| || Sbjct 161695 AGACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCA 161754 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | | || || |||||||| ||| | || || | || || || |||||||||| Sbjct 161755 ACAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAA 161814 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | ||||| ||||| |||||||| || || | || ||||| ||||| Sbjct 161815 TATTCAAAAAGAATCGACTCTTCACCTTGTTCTTCGCCTTCGTGGTGG 161862 Score = 145 bits (160), Expect = 9e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || || ||||| ||||| || || ||||| || ||||| ||||| | Sbjct 162092 ATGCAAATTTTCGTGAAGACCCTTACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 162151 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | |||| | || || |||||||| ||||| || ||||||||||||||||| Sbjct 162152 GATACGATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGAATTCCTCCAGACCAA 162211 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || | | || |||||||| |||||||| || |||| || || || | || || ||| Sbjct 162212 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGCACACTCTCTGATTACAAT 162271 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | ||||||||||| || || ||||| || | ||||| Sbjct 162272 ATACAAAAGGAATCAACCCTGCATCTTGTACTTCGTCT 162309 Score = 141 bits (156), Expect = 1e-28 Identities = 168/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27405 AATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGG 27464 ||||||||| ||||| || || ||||| || || || || ||||| || || ||| | Sbjct 162555 AATGCAAATTTTTGTAAAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTC 162614 Query 27465 TGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCA 27524 || | || | |||| | ||||| || |||||||| || || || ||||| || || || Sbjct 162615 AGACACTATCGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCA 162674 Query 27525 GCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAA 27584 ||| | | || || |||||||| ||| | ||||| | ||| || || | |||||||| Sbjct 162675 ACAGAGATTGATCTTCGCTGGTAAACAATTGGAGGACGGTCGCACGCTGTCCGACTATAA 162734 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | | |||||||| || ||||||||||| || | || ||||| ||||| Sbjct 162735 TATTCAAAAGGAGTCAACTCTTCATCTTGTTCTTCGCCTTCGTGGTGG 162782 Score = 132 bits (146), Expect = 5e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| ||||| |||||||| || || || || ||||| || ||||| ||||| | Sbjct 160422 ATCATGCAGATCTTCGTCAAGACACTGACAGGAAAAACTATCACCCTTGAAGTTGAAGCT 160481 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 |||| |||| || |||| || || ||||| || || || || |||||||||||| Sbjct 160482 TCCGATACAATTGAGAACGTGAAAGCAAAGATTCAAGATAAAGAAGGTATTCCTCCAGAC 160541 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 || ||| | | || ||||||||||| ||| | || |||| || || || | || || Sbjct 160542 CAACAGAGGTTGATCTTTGCTGGTAAACAATTGGAAGATGGGCGCACACTTTCTGATTAC 160601 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 ||| | ||||||||||| || || ||||| || | ||||| Sbjct 160602 AATATACAAAAGGAATCAACCCTGCATCTTGTACTTCGTCT 160642 >seq2682 Length=416 Score = 145 bits (160), Expect = 9e-30 Identities = 163/218 (75%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||| || |||||||| ||||| || || || || ||||| || |||||| | Sbjct 320 ATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCTTCA 261 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | |||| |||| | ||||| || |||||||| || || || ||||| || || || Sbjct 260 GACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCAA 201 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||| | | || || |||||||| ||| | || || | || || || ||||||||||| Sbjct 200 CAGAGAGTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAAT 141 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCT 27623 | ||||||||||| ||||||||||| || | ||||| Sbjct 140 ATTCAAAAGGAATCGACTCTTCATCTTGTTCTTCGTCT 103 >seq129 Length=1828789 Score = 127 bits (140), Expect = 2e-24 Identities = 141/188 (75%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || ||||| || || | || || || || || || ||||| || || || Sbjct 1158596 ATGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCATCA 1158655 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| |||| | || |||||||| ||||| || || |||||||| || || ||| Sbjct 1158656 GATACTATTGAAAATGTAAAAGCTAAAATCCAGGATAAAGAAGGAATTCCACCTGATCAG 1158715 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| ||||||||||| |||||| | || |||| ||||| || |||| |||||| Sbjct 1158716 CAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATTATAAT 1158775 Query 27586 GTCCAAAA 27593 | ||||| Sbjct 1158776 ATTCAAAA 1158783 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570270770556080