Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_028238.1 Length=188534 Score E Sequences producing significant alignments: (Bits) Value seq51 136 5e-27 seq3721 91.5 2e-13 >seq51 Length=996734 Score = 136 bits (150), Expect = 5e-27 Identities = 283/414 (68%), Gaps = 22/414 (5%) Strand=Plus/Minus Query 89004 AAAAATATTAATAGGTGTCACTGGCAGTGTTGCTACTATTAAATTACCGGAGTTGCTAGA 89063 ||||||| |||| ||| ||||| || ||||| || |||||||| || | || |||| Sbjct 186095 AAAAATACTAATTGGTTGTACTGGTAGCGTTGCAACAATTAAATTGCCACAATTAGTAGA 186036 Query 89064 TAAATTATTAGGACTAGGTAATATTGAAATACGTATAGTAGCCACGAAAAACGCTACTCA 89123 || |||| | | | |||| | || || | |||||| ||| |||| |||| || Sbjct 186035 GAAGTTATG-GCAGAA--TAATTTGGATGTAAGGGTAGTAGTCACTGAAAAGGCTAAACA 185979 Query 89124 TTTCTATGATCAAAAAATATAATAATGCCT-----ATTTACACCGATT--CAGAC----- 89171 |||| ||| || || | || ||||| | || || ||| | ||| Sbjct 185978 TTTCC-TGA--AAGAAGCAGAAC--TGCCTCCAGGAATT-CAAGTATTATCTGACACTGT 185925 Query 89172 -GAATGGTTTACATGGAAAGAATTATTCGATCCTGTCTTGCATATAGAACTTAGGAGGTG 89230 |||||| | ||| |||| | ||||||||| || ||||| || || | ||| Sbjct 185924 AGAATGGGCAGCTTGGCAAGATAGAGGCGATCCTGTATTACATATTGATCTAGTAAAGTG 185865 Query 89231 GGCTGATATATTTATTATCGCGCCACTAACGGCTAATACTCTAGCGAAGATAGCTAATGG 89290 ||||||| ||||| | ||||| |||||| || ||||| || | || ||||| | ||| Sbjct 185864 GGCTGATTTATTTTTAATCGCTCCACTAGATGCCAATACCCTTGGTAAAATAGCCAGTGG 185805 Query 89291 TATATGCGACAACTTACTAACTTCTATAGTTAGGGCATGGGATATATCAAAGCCCCTTAT 89350 |||||||| || | |||||| | | | | || |||||| || ||||| | || Sbjct 185804 CATATGCGATAATATCTTAACTTGTGTCGCACGTGCCTGGGATCCATTGAAGCCTTTGAT 185745 Query 89351 TTTTTGTCCTGCCATGAATACTCTAATGTGGGAACATCCTATTACTGAATCACA 89404 ||||||||| || |||||||| |||||||||||||||| |||||| | |||| Sbjct 185744 TTTTTGTCCCGCAATGAATACAAAAATGTGGGAACATCCTGTTACTGCACCACA 185691 >seq3721 Length=254203 Score = 91.5 bits (100), Expect = 2e-13 Identities = 181/264 (69%), Gaps = 7/264 (3%) Strand=Plus/Plus Query 46890 TGTATATTTGTTAATGTCGCGTCTAAATGCCGTTTAGCAGATAGTAATTATAAGGAACTA 46949 |||||| |||||||||| || || || | || |||||| ||||||| |||||| Sbjct 223014 TGTATAATTGTTAATGTTGCCAGCAACTGTGGATTTACAGATACACATTATAAAGAACTA 223073 Query 46950 GTTGAGTTACACAACAAATATTAT----TGCAATGGTTTGCGTATAATGGCTTTTCCATG 47005 || | || | | || || | || || ||||| | || | || || |||| Sbjct 223074 GTACAATTGTATGAAAAGTACAGTAAGGTGGAA-GGTTTAAGGATTCTAGCATTCCCATC 223132 Query 47006 TAACCAGTTTGGTAACCAAGAACCAGGTAATGCGATAGAAATAATGAATACCATGAAAAA 47065 || || |||||| |||||||||||| ||| | | |||||| | ||| | | ||||| Sbjct 223133 GAATCAATTTGGTGGCCAAGAACCAGGCAATTCCACAGAAATCTTAAATTTCGTCAAAAA 223192 Query 47066 ATAT-TCTATATTTTTTAACGTATCTGAAAAAATACTGGTTAATAGTATTTATGCGCATC 47124 |||| | || |||| | | | | | ||||||| |||||| | | ||||||||| Sbjct 223193 ATATAACGTTACTTTTGATC-TGTTTCAAAAAATCGATGTTAATGGAGATAATGCGCATC 223251 Query 47125 CTTTGTGGAAATGGTTACAGACAC 47148 | || ||||||||||| |||||| Sbjct 223252 CGTTATGGAAATGGTTGAAGACAC 223275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 603138886474160