Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_028448.1 Length=167467 Score E Sequences producing significant alignments: (Bits) Value seq2372 140 3e-28 seq2331 127 2e-24 seq1913 127 2e-24 seq3883 98.7 1e-15 seq1791 84.2 2e-11 >seq2372 Length=84335 Score = 140 bits (154), Expect = 3e-28 Identities = 305/452 (67%), Gaps = 10/452 (2%) Strand=Plus/Plus Query 81493 CATCAAATCATTCAGCTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACGCC 81552 ||| || | ||| | || || |||||||| | ||| || | ||| |||||||| | || Sbjct 73691 CATTAATTTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACC 73750 Query 81553 TTTGTTATTTTTCAAAACGAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGC 81612 |||||| | || | | ||||| ||||| |||||||| | |||||| | | Sbjct 73751 ACGGTTATTGCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATAC 73810 Query 81613 AGTAGCAGCGCCGCCACGAATTCCACCCTGTGAACATGATTTAACTGCAGTCTGAAAATG 81672 || || || || || || | || || || ||||| ||||| || || || || || | Sbjct 73811 CGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTA 73870 Query 81673 TTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTTC 81732 || |||| |||||| |||||||||| |||| || || ||| | ||| Sbjct 73871 CTTATAAAATGGAATACAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTAA 73930 Query 81733 AGCACGAATCATACCTACGTTAATTCCAATTCCAGCGCGTTTAGAAATATATTCAACAAT 81792 ||||| ||| |||| | ||||| |||||||||||||||| || | |||| |||||| Sbjct 73931 GGCACGGATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAAT 73990 Query 81793 TG---AAGCAGAAGCTTTATTAATTGACTTCAATGA--ATCACCAGCTTCAATAACAACG 81847 | || | || ||||||||| |||| || |||| | ||||| | || Sbjct 73991 AGCGCTCGCGGTGGC---ATTAATTGA-GTCAA-GACTATCATCGCACTCAATCAATACA 74045 Query 81848 CATGAACTAAACTGTCGAGTCGGAGTACGGCAACCAGCCATAATAGGAGTTGGCAATGAA 81907 || ||||||||||| ||||| ||||| || || |||||||| || || || | ||| Sbjct 74046 CACGAACTAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAA 74105 Query 81908 ATCTGTCGAGTAGATACTGCTTCATAAAAACG 81939 || | || || | || ||||||||||| Sbjct 74106 ATTTTAAAGGTGGAAATCGCATCATAAAAACG 74137 >seq2331 Length=68774 Score = 127 bits (140), Expect = 2e-24 Identities = 130/170 (76%), Gaps = 0/170 (0%) Strand=Plus/Plus Query 3819 GTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 3878 ||||| |||||||| |||||||| || || ||||| || || | || ||||| || || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 3879 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 3938 |||||||| || ||||| || || | ||||| || ||||| || || ||||| || ||| Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 3939 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTC 3988 || | ||||||||||| | || || || || | |||||| |||||||| Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTC 23810 >seq1913 Length=212763 Score = 127 bits (140), Expect = 2e-24 Identities = 393/596 (66%), Gaps = 19/596 (3%) Strand=Plus/Minus Query 151943 ACCAAATGTAATTGTTACAAAAGGTGTTTGCCCGTTTGAACTAAAGAGAGTATTTACTTC 152002 ||||||| || ||| |||||||| || || || || | | || || ||||| ||||| Sbjct 32340 ACCAAATCCAAATGTAACAAAAGGGGTCTGTCCATTCGCAGTATGTAGCGTATTGACTTC 32281 Query 152003 ATATTCATAAGCTTGGAATGCATCGTATACGTCTTTTTCTGTTTTAGATTGAGCATAATT 152062 |||||| | | ||| |||||||| || |||||||| || || | ||| || || Sbjct 32280 ATATTCTAACGATTGAAATGCATCATAACACTCTTTTTCAGTACGTGACTTAGCGTAGTT 32221 Query 152063 CAACGCATCAGCGATTTGCCATTTTTCTGC-ATCCTCAATATGTTTTGCATA--TGTGCG 152119 ||||| |||||||| | ||| || || | | ||||||| |||| | | || Sbjct 32220 TTCGATATCAGGAATTTGCCACTCTTCGGCTATAC-GACGATGTTTTTCATAACTTTTCG 32162 Query 152120 TTTAACATAAGGAGAAAGTACTTTATC--TAC-ATTCGCAAAAGTCGTTCCGCCATATTG 152176 | ||| | || || |||| ||| ||| ||| || || || || ||||| Sbjct 32161 AT--ACAAATTTAGCCAGAACTTCATCAATACGATT---AATGGTGGTGCCACCATAAAT 32107 Query 152177 ATGGGAAGCAACCTGTGCAGTAATTTGTGCCATAATTGCAGTAGCAACGCCAATTGATTT 152236 |||| || || || || |||| ||||| | | || || ||| ||||||||| Sbjct 32106 ATGGCTGGCTACTTGGGCTATAATCTGTGCGGTTACAGCGGTGGCAGTTGAAATTGATTT 32047 Query 152237 AGGAGTTTCAATCTGTGCATTACCAAGCTTAAATCCGTTCTCAAGCATTCCTTTTAAATC 152296 ||| | |||||| | ||||| || | ||||| || || |||||||| | |||||| Sbjct 32046 AGGCGGTTCAATTTCAGCATTTCCCATTTTAAAACCCTTGGTTAGCATTCCATCTAAATC 31987 Query 152297 TACTAAACAGCAATT-AGTAAATGGAAGAGCAGGG-GAATAATCAATATCATGGAAATGA 152354 | || ||| || | | | |||| | |||| | |||||| | |||||| ||||| Sbjct 31986 AATTAGCATGCAGTTAAACATAGGGAAAA--AGGGAGCATAATCCAGATCATGATAATGA 31929 Query 152355 ATAATTCCGCTTTCATGCGCTTTCATAATAAAAGACGGGACCATATTT---TTGGCAATG 152411 || || | |||||||| | ||| || | |||| | || ||| Sbjct 31928 ATTTCACCACGATCATGCGCAATAGAAATTTCTTTAGGTAAGATATATTGCTTAGCATAA 31869 Query 152412 TGTTTAGACACAATACCAGCCATAAGGTCCCGTTGAGTTGGAAAAACACGAGAATCTTTA 152471 ||||||| || ||||| || | | || || ||||| |||| ||| | ||||||| Sbjct 31868 TGTTTAGCAACGATACCTGCTAATAAATCGCGCTGAGTAGGAATAACTTTACTATCTTTA 31809 Query 152472 TTAGCATTCTCGTTCAAAAGGTCTTTATTAGTTTTATGAATCAATCCTTCAATTTC 152527 |||||||| |||||||||| | ||||| ||| | ||| || |||| ||| || Sbjct 31808 TTAGCATTTTCGTTCAAAATTGCCATATTACTTTGTTCAATTAACCCTTTAATCTC 31753 >seq3883 Length=158444 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 3818 AGTAAAGGTACGAGCGATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 3877 |||||| || |||| || ||||| || || || ||| | ||||||||| || || Sbjct 116551 AGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACGTAC 116492 Query 3878 TGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 3937 |||||||| || ||||| || || | || ||||| ||||| |||| | | |||||| Sbjct 116491 GGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGCATC 116432 Query 3938 TTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCA 3989 | | ||||||||| | |||||||| || ||||| |||||||||||| Sbjct 116431 TAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTCA 116380 >seq1791 Length=77084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 12819 ATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-C 12877 |||||||||| | | ||||||||| | ||||||||| ||||||| ||||||||||| | Sbjct 16639 ATTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGC 16580 Query 12878 CATTATACGATATCCGCA 12895 ||||||||||| ||||| Sbjct 16579 CATTATACGATGCCCGCA 16562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535729170932280