Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_028683.1 Length=177643 Score E Sequences producing significant alignments: (Bits) Value seq2372 123 3e-23 >seq2372 Length=84335 Score = 123 bits (136), Expect = 3e-23 Identities = 317/474 (67%), Gaps = 24/474 (5%) Strand=Plus/Plus Query 147729 AGGGCTGAATAATGTGATGTAGTCATTCTTAATAAGACGTTCTAACATCAGGTCATTAAT 147788 |||||| || | | ||| | || || ||||| | ||| | |||| | | |||||| Sbjct 73646 AGGGCTAAACAGCGAGATATTTTCGTTTTTAATTAAACGCTGGTACATTAATTTATTAAT 73705 Query 147789 CTGGACGCCATAATCTAAGTGACGAATACGGTTCTCGTCTA---CACCTTTATTGTTTTT 147845 || || ||||||||||| || || | || || || || | ||| |||||| | Sbjct 73706 TTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATTGCGT-- 73763 Query 147846 CAGAACGAGAAGGTTTTCGACTTCTAAATGCCAAATTGGATAGTACAATGTTGCTGCACC 147905 || || | | |||||| |||||||||||||| | ||||| | | ||||| || || Sbjct 73764 -AGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCC 73822 Query 147906 ACCACGTACACCACCTTGGGAACATGATTTAACAGAAGCTTGAATAGT-TTTCCAGAATG 147964 || ||||| || ||||| ||||| ||||| |||| | ||| | ||| || | |||| Sbjct 73823 CCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGA-AGTACTTATAAAATG 73881 Query 147965 GAATCACGCCTGTGTGCTTAACTTCACCATGTCCAATCTTAGAACCTTCTGCACGAATCA 148024 |||| || || || |||| ||| | ||| | ||| ||||| ||| Sbjct 73882 GAATACAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTAAGGCACGGATCT 73941 Query 148025 TACCAGCGTTAACACCAATACCAGCTCGTTTACTGAT--GTACTTAATGATTGAAGCATT 148082 |||| || |||| ||||| ||||| |||| |||| ||| |||| || ||| | Sbjct 73942 TACCGGCATTAATGCCAATTCCAGCGCGTT--GTGATACGTATTTAACAAT---AGCGCT 73996 Query 148083 ---TGTGGTATTAATCGAATCCAGTGAATCACCACCTTCAATAACAACAC---AACTCGA 148136 |||| |||||| || || || |||| | | ||||| | |||| |||| Sbjct 73997 CGCGGTGGCATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAACT--- 74053 Query 148137 GAATTGACGAGTCGGAGTACGAACACCTGCCATAATTGGAGTTGGCAGTGAAAT 148190 || || ||||| ||||| || || || ||||||||||| || || || ||||| Sbjct 74054 AAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAAT 74107 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568290108196920