Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_028686.1 Length=166313 Score E Sequences producing significant alignments: (Bits) Value seq2372 203 3e-47 seq2331 120 3e-22 seq3883 86.0 7e-12 >seq2372 Length=84335 Score = 203 bits (224), Expect = 3e-47 Identities = 352/507 (69%), Gaps = 16/507 (3%) Strand=Plus/Plus Query 128589 GGACTGAACAATGTGATGTAATCATTCTTAATCAAACGTTCAATCATCAGGTTATTAATC 128648 || || |||| | ||| | || || ||||| ||||| | ||| | |||||||| Sbjct 73647 GGGCTAAACAGCGAGATATTTTCGTTTTTAATTAAACGCTGGTACATTAATTTATTAATT 73706 Query 128649 TGAACACCATAATCTAAATGACGAATACGGTTTTCATCTACACCTTTGTTGTTCTTAAGT 128708 || || |||||||||||||| || | || ||||| || | ||| ||| || || Sbjct 73707 TGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATTGCGTAGC 73766 Query 128709 ACGAGGAGGTTTTCAACTTCCAAGTGCCAGATTGGATAGTACAGTGTCGCCGCGCCACCA 128768 || | | |||||| ||||| || ||||| | ||||| | | || ||||| || || Sbjct 73767 ACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCCCCCG 73826 Query 128769 CGGACTCCGCCTTGGGAGCAGGATTTAACTGCTGTTTGGAAGTGCTTCCAGAAAGGAATA 128828 || || |||||||| || |||||||| || ||||||||||||| ||| | || |||||| Sbjct 73827 CGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAATGGAATA 73886 Query 128829 ACTCCAGTATGTTTGACTTCAC-----CGAATCCAATTTTTGAACCTTCTGCACGAATCA 128883 |||||||| |||| | || ||| | || ||| ||||| ||| Sbjct 73887 CAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTT-----CCTAAGGCACGGATCT 73941 Query 128884 TACCTGCATTAATACCAATACCTGCACGCTTACTGAT--GTATTTTGTAATTGACGC-AG 128940 |||| |||||||| ||||| || | ||| | |||| |||||| ||| | ||| | Sbjct 73942 TACCGGCATTAATGCCAATTCCAG--CGCGTTGTGATACGTATTTAACAATAG-CGCTCG 73998 Query 128941 CAGCTTCGTTAATTGAATTAAGACTATCACCGCCTTCAATAACCACGCATGAACTAAACT 129000 | | | |||||||| | |||||||||| ||| ||||| | || || |||||||||| Sbjct 73999 CGGTGGCATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAACTAAACT 74058 Query 129001 GACGTGTCGGAGTACGAACACCAGACATAATTGGAGTTGGCAATGAAATCTTTTTAGTAG 129060 | || || ||||| || || || | ||||||||| || || | ||||| || || | Sbjct 74059 GGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATTTTAAAGGTGG 74118 Query 129061 AAACTGCATCATAGAAACGAATAACGT 129087 ||| |||||||| ||||| ||| || Sbjct 74119 AAATCGCATCATAAAAACGTTTAATGT 74145 >seq2331 Length=68774 Score = 120 bits (132), Expect = 3e-22 Identities = 153/211 (73%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 48815 TGTGAAAGTACGAGCGATAACGTCGCGCTGCTGTTCCGACGTCAGGGAGTTGAAGCGTAC 48874 ||| ||||||||||| |||||||| || || ||||| | ||| | || || || || || Sbjct 23640 TGTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCAC 23699 Query 48875 CGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGATGCTCAACCGCGTC 48934 ||| || || ||||||||||| || | ||||| || ||||| || || | ||||||||| Sbjct 23700 CGCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTC 23759 Query 48935 CAGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCGCCTTCAATTTTTAC 48994 | ||||||||||| | || || || || | ||| || || ||||| | ||| | Sbjct 23760 TTCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTCTACTTTAAT 23819 Query 48995 CGTTGGCTGGTATTCAATTTCTACTTCACGA 49025 ||||| | ||||| |||||||||| Sbjct 23820 AGTTGGTGCGACATCAATAGGTACTTCACGA 23850 >seq3883 Length=158444 Score = 86.0 bits (94), Expect = 7e-12 Identities = 95/127 (75%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 48861 GAGTTGAAGCGTACCGCGTAGCCGGAAACACGAATGGTCAGCTGCGGATATTTTTCCGGA 48920 ||||| || ||||| || || || ||||||||||| || | || ||||| ||||| ||| Sbjct 116505 GAGTTAAAACGTACGGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGA 116446 Query 48921 TGCTCAACCGCGTCCAGCAGAGTTTCACGACGCAGCACGTTAACGTTCAGGTGCTGACCG 48980 | || | || || | | ||||||||| | |||||||| || ||||||||||| Sbjct 116445 TTTTCCATTGCATCTAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCA 116386 Query 48981 CCTTCAA 48987 ||||||| Sbjct 116385 CCTTCAA 116379 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 532036627535720