Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_028754.1 Length=120098 Score E Sequences producing significant alignments: (Bits) Value seq1913 147 2e-30 seq3883 138 9e-28 seq2331 111 1e-19 >seq1913 Length=212763 Score = 147 bits (162), Expect = 2e-30 Identities = 422/638 (66%), Gaps = 26/638 (4%) Strand=Plus/Plus Query 51722 TGGCATGCTGAAGAATGGTACTAAAATTGGTAATGCAAATATTGAAACTCCTAAATCCAT 51781 ||| ||||| | || ||| |||||| || ||||| | |||||| | |||||||| || Sbjct 31995 TGGAATGCTAACCAAGGGTTTTAAAATGGGAAATGCTGAAATTGAACCGCCTAAATCAAT 32054 Query 51782 AACTACTGCATGTGCAATCACTGCTCAGATTATTGCCCAAGTATCTGGTGCTCAGTATGG 51841 | ||||| || | || || |||||||| ||||||||| | | | ||||| Sbjct 32055 TTCAACTGCCACCGCTGTAACCGCACAGATTATAGCCCAAGTAGCCAGCCATATTTATGG 32114 Query 51842 TGGCACCTCTATTGATCGTATCGACGAGGTTCTAGCCCCGTATGT--CAGAAAGTCTTAC 51899 ||||||| | ||| ||||||| || || ||||| || | ||| | ||||| || Sbjct 32115 TGGCACCACCATTAATCGTATTGATGAAGTTCTGGCTAAATTTGTATCGAAAAGT--TAT 32172 Query 51900 AATAAACATCTGGGTCGTG--GGCTACGT-TGGCTCAAGGATGAAA--GAAAAGCTGCTG 51954 | ||||||| ||||| | | | | |||| | ||| | ||||| Sbjct 32173 GAAAAACATC---GTCGTATAGCCGAAGAGTGGCAAATTCCTGATATCGAAAAC------ 32223 Query 51955 TGTATGCTACTGAGCTTACTGAAAAAGAGTGTTATGATGCATTCCAAGCTCTAGAGTATG 52014 || |||| | ||||||||||||||||||||||||||| ||| | |||| |||| Sbjct 32224 --TACGCTAAGTCACGTACTGAAAAAGAGTGTTATGATGCATTTCAATCGTTAGAATATG 32281 Query 52015 AAACTAATTCATTATTTAACTCTAATGGGCAGACCCCTTTTGTTACGCATGGCTTTGGAT 52074 || ||| | || || | ||||| ||||||||||||||||| ||| ||||| | Sbjct 32282 AAGTCAATACGCTACATACTGCGAATGGACAGACCCCTTTTGTTACATTTGGATTTGGTT 32341 Query 52075 TAGGTCAGGAG-TGGGAGGAAAGGATGATTCAGAAAGCCATCCTCCAAAATCGTATTAAA 52133 |||| || || ||||| | | | ||||| || | ||| | | |||||| Sbjct 32342 TAGG-CACCAGTTGGGAATCACGCTTAATTCAAGAATCGATCTTACGTGTGCGTATTGTT 32400 Query 52134 GGTTTAGGTGCTGCTGAGTCAACCCCTATCTTCCCTAAACTAGTATTCTCAGTTAAAGAA 52193 |||||||| | | ||| | | || |||||| |||| || | | ||||| Sbjct 32401 GGTTTAGGAAAAAATCATAAAACGGCAGTTTTTCCTAAATTAGTCTTTGCGATCAAAGAT 32460 Query 52194 GGGTTAAATAAAAATCCAGGCGATCCTAACTACGATATAAAACAGCTAGCACTTGAGTGT 52253 ||| | ||| | || ||| |||| || || || ||||| ||||| | |||||| Sbjct 32461 GGGGTTAATCATAAGCCAACAGATCAAAATTATACGATTAAACAATTAGCATTAGAGTGT 32520 Query 52254 TCTGCTACCCGTATGTACCCAGACTAT--TTAAGCTATGAGAAAGTTGTAGCTGTTACTG 52311 | |||| || ||||| || || ||| |||| ||||| |||| || || || | Sbjct 32521 GCCGCTAAACGAATGTATCCTGA-TATCCTTAA-TTATGATCAAGTGGTCAAGGTAACAG 32578 Query 52312 GTGATTTTAAAGCCCCTATGGGTTGTCGTAGCTTTTTA 52349 | |||||| |||| ||||| |||||||| || ||| Sbjct 32579 GATCATTTAAAACCCCAATGGGCTGTCGTAGTTTCTTA 32616 >seq3883 Length=158444 Score = 138 bits (152), Expect = 9e-28 Identities = 141/184 (77%), Gaps = 0/184 (0%) Strand=Plus/Minus Query 30093 ATTACATCGCCTGAGTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTG 30152 ||||||| | |||||||| || ||| |||| ||||| || ||||| || ||| | | Sbjct 116564 ATTACATTGATTGAGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAG 116505 Query 30153 CGTTAAAACGTACAGCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGAT 30212 |||||||||||| || || || |||||||| ||||||||||| || || |||||||||| Sbjct 116504 AGTTAAAACGTACGGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGAT 116445 Query 30213 GTTTCTGTGCATCCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCTC 30272 || | |||||| || | |||||| |||| || || ||||| ||||||||||| | Sbjct 116444 TTTCCATTGCATCTAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCAC 116385 Query 30273 CCTC 30276 | || Sbjct 116384 CTTC 116381 >seq2331 Length=68774 Score = 111 bits (122), Expect = 1e-19 Identities = 129/172 (75%), Gaps = 4/172 (2%) Strand=Plus/Plus Query 30107 GTAAATGTACGACTAATAACGTCGTTCTGTTGTTCACGAGTCAGTGCGTTAAAACGTACA 30166 ||||| |||||| ||||||||| |||||||| | || | || |||||||| || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 30167 GCGTACCCTGAAACACGGATAGTTAATTGAGGGTATTTTTCAGGATGTTT--CTGTGCAT 30224 || || || |||||||| ||||||||||| ||||| |||||||| ||||| | | | | Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 30225 CCAAAAGCTGATCACGACTTAACACATTGACATTTAGGTGCTGACCTCCCTC 30276 | || | | ||||||| ||| ||||| ||||||| ||| || || || || Sbjct 23761 TCTAACGTT--TCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTC 23810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 384162771088741