Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_028762.1 Length=161989 Score E Sequences producing significant alignments: (Bits) Value seq2372 170 2e-37 seq1913 136 4e-27 seq3883 120 3e-22 seq3995 96.9 4e-15 seq2331 84.2 2e-11 >seq2372 Length=84335 Score = 170 bits (188), Expect = 2e-37 Identities = 331/486 (68%), Gaps = 6/486 (1%) Strand=Plus/Plus Query 137425 AAGCATCATACATACCAGGGATTTCATGTGGACTAAACAATGTAATATAATCATCATTAA 137484 |||| |||||| | |||||| ||| || ||||||| | |||| || | |||| Sbjct 73618 AAGCCGCATACAGATCAGGGACATCAGAAGGGCTAAACAGCGAGATATTTTCGTTTTTAA 73677 Query 137485 TTAGTCGTTCAATCATAAGGTCATTAATTTGAACACCATAATCTAAATGACGAATACGGT 137544 ||| || | ||| | | ||||||||| || |||||||||||||| || | || | Sbjct 73678 TTAAACGCTGGTACATTAATTTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGAT 73737 Query 137545 TTTCTTCAATACCTTTATTATTTTTAAGAACTAACAATTTTTCTAATTCAAGGTGCCACA 137604 ||||||||||||| ||||| || || || || ||||||| ||| | ||||| | Sbjct 73738 TTTCTTCAATACCACGGTTATTGCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATA 73797 Query 137605 TTGGGTAATATAAAGTAGCAGAACCACCTCGAATCCCACCTTGGGAACATGATTTTACAG 137664 || ||| ||| || || | || || || | ||| ||||| ||||| ||||| |||| Sbjct 73798 ACGGATAAAATACCGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAG 73857 Query 137665 ATGCCAAATGG--GT-TTTCCAAAATGGAATGACACCGGTATGGACAACTTCGCCAAATC 137721 || ||| || || |||||||||| ||| ||||||| |||||||| | Sbjct 73858 CTG---TTTGGAAGTACTTATAAAATGGAATACAACCAGTATGGAACGCTTCGCCACCGC 73914 Query 137722 CTATTTTAGACCCTTCAGCCCTATACATACCGGCATTAATACCAATACCAGCTCTTTTAG 137781 || | ||| || | | ||||||||||||| ||||| ||||| | || | Sbjct 73915 GGATCGGACTTCCTAAGGCACGGATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTG 73974 Query 137782 AAATGTATTTTACAATAGCTGCATTTGTTTCATTAATAGAATCTAAAGAATCACCGCTAT 137841 | | |||||| |||||||| || ||||||| || || | | |||| ||| | Sbjct 73975 ATACGTATTTAACAATAGCGCTCGCGGTGGCATTAATTGAGTCAAGACTATCATCGCACT 74034 Query 137842 CAATAACTACGCAAGAACTAAATTGACGTGTTGGGGTTCTTACACCAGACAAAATTGGTG 137901 |||| | ||| || |||||||| || || ||||| || | || || | || |||||| | Sbjct 74035 CAATCAATACACACGAACTAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCG 74094 Query 137902 TTGGTA 137907 | |||| Sbjct 74095 TAGGTA 74100 Score = 136 bits (150), Expect = 4e-27 Identities = 231/332 (70%), Gaps = 2/332 (1%) Strand=Plus/Plus Query 135714 AACAATCTCATCAAATTCTTTTGAAGGGTCTTCATAAAGATTACGCATAATATGGGTATA 135773 |||||| |||||||| ||||| || | || ||| || |||||||| ||||| Sbjct 71917 AACAATATCATCAAAAATCAAAGAAGGATCATTGACAATATTGCGAATAATATGCGTATA 71976 Query 135774 CGAACGAGAATGAATTGTTTCACTAAATGACCAGGTCTGAATCCATGTTTCTAAAG-ATA 135832 || || |||||||| || ||| ||||||||| || | | |||||||||||| | Sbjct 71977 GGAGCGCGAATGAATAGTCTCAGAAAATGACCAAGTTTCTACCCATGTTTCTAATTCAGG 72036 Query 135833 CATCAGAACAAATAGATAATAAAGCCTCTGAAGGACCTCTGCCTTGGATTGAATCTAATA 135892 || |||| | || |||||| ||| | |||| | ||||| || || ||||||| Sbjct 72037 GAT-AGAAATTAGAGGTAATAATGCCACATTTGGACTACGTCCTTGAATGGAGTCTAATA 72095 Query 135893 ATGTTTGATATTTTAAATTATTAGTAAAGATTCTTTTTTCGTGTTCAGGTAATTTGTCAT 135952 | |||||||||||||||||| | ||||||| |||||| |||||||||| | | || Sbjct 72096 AGGTTTGATATTTTAAATTACTGATAAAGATATGTTTTTCATGTTCAGGTAGCTGCTGAT 72155 Query 135953 ATTGTGCCTTATCTGTCATTAAGTTTACTTCTTCAGGACGCCaaaaaaaGCTTAAAGCTT 136012 | | |||| | | | | || ||||| ||||||||||||||| | || Sbjct 72156 AATCAATACGATCTTTAGTAATATCCACCTCTTCTGGACGCCAAAAAAAGGAGAGTTGTT 72215 Query 136013 TTTCAGTCAAGTCTTCAAAGACCCGATGTTTT 136044 ||||| |||| | |||||| | | || |||| Sbjct 72216 TTTCAATCAATTTTTCAAACATCTCATATTTT 72247 >seq1913 Length=212763 Score = 136 bits (150), Expect = 4e-27 Identities = 215/307 (70%), Gaps = 1/307 (0%) Strand=Plus/Plus Query 129153 ATTTTTGAATCCAACAGCCATAGGTAATCCTGAAGCAATTTCACGATGGGTCTGTGATTC 129212 |||||| || |||| | ||||| | || || || ||||||||||| || |||||||| Sbjct 17346 ATTTTTAAAACCAATTGGCATAGAAAGACCCGATGCCATTTCACGATGTGTTTGTGATTC 17405 Query 129213 TGTAGTACGAGCACCAATAGCGACCCAACTAAAAATACCTGATAGATACTTAATAGTAAA 129272 || || |||||||||||||| ||||||| | || | | || ||| | ||| Sbjct 17406 CGTGGTTCGAGCACCAATAGCAGCCCAACTGATAAGATCACCTATATATTGTGGTGTATT 17465 Query 129273 TGGGTCCAAGACCTCTGTCGCCAAAGGAAGTCCAAGATTCAATAGTTCTAAACAGAGATG 129332 || || || | || ||||| ||||| || || | || || || | | | || Sbjct 17466 AGGATCTAATGCTTCAGTCGCTAAAGGTAGCCCTAACTTTGCTAAATCCATAAGTAACTG 17525 Query 129333 GCGGGCAATTCTTAACCCTTCATCAATATTAAAAGAACCATTTAATTCTGGGTCGTTGAC 129392 | |||||| ||| |||| ||||||| ||||||| || | | || || || | Sbjct 17526 TCTGGCAATATGTAAACCTTTTTCAATATCAAAAGAATTATCCATATTAGGATCATTAAT 17585 Query 129393 TAGGCCTTTCCAACCTACAGTTGTGCGTGGTTTTTCAAAATAAACCCGCATAACCAATAG 129452 || ||||||||||| || ||||| | ||| |||||||||||||||||||| | ||||| Sbjct 17586 TAATCCTTTCCAACCAACGGTTGTTCTTGGCTTTTCAAAATAAACCCGCATTA-CAATAT 17644 Query 129453 ATATTTG 129459 | ||||| Sbjct 17645 ACATTTG 17651 >seq3883 Length=158444 Score = 120 bits (132), Expect = 3e-22 Identities = 129/171 (75%), Gaps = 0/171 (0%) Strand=Plus/Minus Query 55540 AGTAAATGTTCTGTTAATAACATCTTCTTTCTGTTCTGCAGTCAGAGAATTAAATCTGAC 55599 |||||| || | |||| || |||| || || ||| ||| | ||| ||||| | || Sbjct 116551 AGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACGTAC 116492 Query 55600 GGCATACCCAGAAACGCGAATTGTTAATTGTGGATATTTTTCAGGATGTTCTTTAGCATC 55659 |||||| |||||||| ||||| |||||||||||||| |||||||||| ||| | ||||| Sbjct 116491 GGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGCATC 116432 Query 55660 TAACAACATTTCTTTATTAAGAACATTGACATTCAGATGTTGTCCACCTTC 55710 ||| || |||| ||| | || || ||||| || || || |||||||| Sbjct 116431 TAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTC 116381 >seq3995 Length=10512 Score = 96.9 bits (106), Expect = 4e-15 Identities = 59/63 (94%), Gaps = 0/63 (0%) Strand=Plus/Plus Query 64869 CTACAGGATTCGAACCTGTGACCTAGGGCTTAGAAGGTCCTTGCTCTATCCAACTGAGCT 64928 ||||||||||||||||||||||||| ||||||||||| | |||||||||||| ||||||| Sbjct 8963 CTACAGGATTCGAACCTGTGACCTACGGCTTAGAAGGCCGTTGCTCTATCCAGCTGAGCT 9022 Query 64929 AAG 64931 ||| Sbjct 9023 AAG 9025 >seq2331 Length=68774 Score = 84.2 bits (92), Expect = 2e-11 Identities = 112/156 (72%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 55555 AATAACATCTTCTTTCTGTTCTGCAGTCAGAGAATTAAATCTGACGGCATACCCAGAAAC 55614 |||||| || || ||||||| || | |||||||| | || ||||| |||||||| Sbjct 23655 AATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACCGCATAACCAGAAAC 23714 Query 55615 GCGAATTGTTAATTGTGGATATTTTTCAGGATGTTCTTTAGCATCTAACAACATTTCTTT 55674 ||||| |||||||| || || |||||||| |||| || ||| ||| |||| Sbjct 23715 ACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCTTCTAACGTTTCACG 23774 Query 55675 ATTAAGAACATTGACATTCAGATGTTGTCCACCTTC 55710 | | ||||| ||||| | |||||||||||||| Sbjct 23775 ACGTAATACATTCACATTTAAGTGTTGTCCACCTTC 23810 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518200789020360