Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_028773.1 Length=182145 Score E Sequences producing significant alignments: (Bits) Value seq2372 181 1e-40 seq3883 138 1e-27 seq2331 118 1e-21 >seq2372 Length=84335 Score = 181 bits (200), Expect = 1e-40 Identities = 296/422 (70%), Gaps = 6/422 (1%) Strand=Plus/Minus Query 18310 CCAACCCCAATTATGGCAGGCGTTCGCACCCCAACCCGCCAGTTCTCAAGCTGTGTTAAG 18369 || || ||||||||||| || || ||||| ||||| |||||||| ||||| | Sbjct 74098 CCTACGCCAATTATGGCGGGGGTGCGCACTCCAACTCGCCAGTTTAGTTCGTGTGTATTG 74039 Query 18370 ATTGAAGTCGGTGACAGCCTCGAATCAATTAACGAATCAGCCGCCGCAGTCGTAAATTA- 18428 ||||| || ||| || || || |||||||| | | || ||| | || || || Sbjct 74038 ATTGAGTGCGATGATAGTCTTGACTCAATTAATGCCACCGCGAGCGCTATTGTTAAATAC 73979 Query 18429 -TATTAGTAAACGCGCTGGTATCGGTATTAACGCTGGTCGAATTCGTGCGGAAGGAAGTC 18487 ||| | |||||||||| || || ||||| || ||| || ||||| |||||||| Sbjct 73978 GTATCA--CAACGCGCTGGAATTGGCATTAATGCCGGTAAGATCCGTGCCTTAGGAAGTC 73921 Query 18488 AAGTTCGCTCTGGTGAAGTCAAACACACTGGTGTTATTCCATTCTGGAAACATTTCCAGA 18547 | ||| ||| |||| || |||||| ||||||||| | || | ||||| | Sbjct 73920 CGATCCGCGGTGGCGAAGCGTTCCATACTGGTTGTATTCCATTTTATAAGTACTTCCAAA 73861 Query 18548 CTGCTGTTAAATCGTGTTCACAAGGCGGTGTTCGTGGTGGTGCGGCAACTCTGTATTATC 18607 | ||||| ||||| ||||| |||||||| || || || || |||||||| | | ||||| Sbjct 73860 CAGCTGTGAAATCCTGTTCTCAAGGCGGGGTACGCGGGGGGGCGGCAACGGTATTTTATC 73801 Query 18608 CTATGTGGCATCTTGAATTCGAAAAGCTGATT-GTTCTGAAAAATAACAAAGGTGTTGAT 18666 | | |||||| | ||| | ||||| || ||| || || |||||| ||| |||| Sbjct 73800 CGTTATGGCATTTAGAAGTAGAAAA-CTTATTGGTGCTACGCAATAACCGTGGTATTGAA 73742 Query 18667 GAAAACCGCATTCGTCAGCTTGATTATGGTCTACAAATCAATAAACTGATGTTCGAACGT 18726 ||||| ||| | || || | |||||||| ||||||| |||||| | |||| | | ||| Sbjct 73741 GAAAATCGCGTGCGCCATTTAGATTATGGGGTACAAATTAATAAATTAATGTACCAGCGT 73682 Query 18727 TT 18728 || Sbjct 73681 TT 73680 Score = 176 bits (194), Expect = 5e-39 Identities = 662/1019 (65%), Gaps = 37/1019 (4%) Strand=Plus/Minus Query 20082 CAGAAACATGAAATGTTCGAAAACTTAATTGAAAAGCAGTTGAGTTTCTTCTGGCGTCCT 20141 || ||| |||| ||||| ||||| || |||||||| || | || || |||||||| Sbjct 72249 CAAAAATATGAGATGTTTGAAAAATTGATTGAAAAACAACTCTCCTTTTTTTGGCGTCCA 72190 Query 20142 GAAGAGGTTGACGTAACTCGTGATAAGATCGATTATGATAATTTACCAGAACATGAAAAA 20201 |||||||| || | ||| ||| || |||||| | | |||| |||||||||||| Sbjct 72189 GAAGAGGTGGATATTACTAAAGATCGTATTGATTATCAGCAGCTACCTGAACATGAAAAA 72130 Query 20202 CATATCTTTACTTCCAATTTGAAGTATCAGAGCTTACTCGATACCGTTCAGGGACGTGCT 20261 |||||||||| ||||| || ||||| | |||| | || || |||| |||||| | Sbjct 72129 CATATCTTTATCAGTAATTTAAAATATCAAACCTTATTAGACTCCATTCAAGGACGTAGT 72070 Query 20262 CCTAACACTGC--TTTTATGTCCA--TCGTAT--CTGATGTAACACTTGACACATGGATT 20315 || || || | ||| || | | ||| |||| | | || |||||| | Sbjct 72069 CCAAATGTGGCATTATTACCTCTAATTTCTATCCCTGA------ATTAGAAACATGGGTA 72016 Query 20316 CCTACCTGGGCGTTCTCGGAGACAATCCACAGTCGTTCTTATACACACATTATGCGCAAC 20375 || ||| | || || ||||| || || || || ||||| || ||||| ||||| Sbjct 72015 GAAACTTGGTCATTTTCTGAGACTATTCATTCGCGCTCCTATACGCATATTATTCGCAAT 71956 Query 20376 GTGTACGAAGATCCGTCCAAGATCTTTGACGAAATCGTTCTTGATTCTGCAATCATGAAG 20435 | | | ||||| || ||| ||||| || || ||| | || | ||| || Sbjct 71955 ATTGTCAATGATCCTTCTTTGATTTTTGATGATATTGTTAATAATCAGGAGATCCAAAAA 71896 Query 20436 CGTGCTGATGCTGTTACCCGCTATTACGACCAACTGATTAACGCGACCACTGATTATCAT 20495 ||||| | | | | || ||||| || | | |||| | |||||| |||| | Sbjct 71895 CGTGCAACGGATATCGCTCGTTATTATGATGATTTAATTA---CTACCACTAATTACTAC 71839 Query 20496 CATTTCTGTAATAACTTTACAGCAGAGACGGAAGTTAATG--AAAATTATAAACGTTTGA 20553 ||||| | || ||| || || |||||| |||| || | | || | Sbjct 71838 CATTTATTAGGTACGGGTAC-CCA-----TCAAATTAATGGTAAAACCATTACCATT--A 71787 Query 20554 TGTTGCGAGATATTAAA-AAGAAACTGTATCTGTGTATGCACGCCGTTAACGCACTGGAA 20612 ||||| || |||||| || ||||| ||||| ||| | ||| || || || ||| Sbjct 71786 ACTTGCGTGA-ATTAAAGAAAAAACTTTATCTCTGTTTAATGAGCGTCAATGCGCTTGAA 71728 Query 20613 GCAATTCGTTTCTATGTTTCGTTTGCTTGCACCTTTGCATTTGCAGAAGATAAGAAAATG 20672 || ||||| || |||||| ||||| ||| | ||||| ||||| ||| | |||| Sbjct 71727 GCTATTCGATTTTATGTTAGCTTTGCCTGCTCGTTTGCCTTTGCCGAACGCGAATTAATG 71668 Query 20673 GAAGGCAGTGCTAAAATTATGCGTCTGATTGCGCGTGATGAACAACTGCACTTGAAAGGC 20732 ||||| | ||| |||||||| |||||||| || |||||| || ||| | | || Sbjct 71667 GAAGGAAATGCCAAAATTATTAAACTGATTGCCCGCGATGAAGCTCTTCACCTTACCGGT 71608 Query 20733 ACACAATATATGCTGCGTA--TTTGGCAGCAAGGTAAAGATGATCCTGAAATGATCGAAA 20790 || |||| |||| | || || |||| ||| |||||||||| |||||| || | Sbjct 71607 ACTCAATTTATGATTAATACGTTACGCAG--TGGTGAAGATGATCCAGAAATGGCTGATA 71550 Query 20791 TTGCCAAAGAGTGTGAAGAAGA-AGCTGTTAAATTGTTCTTGGAAGTTGCCGAACAAGAA 20849 | || |||||||| || || | ||| | | |||| | ||| || | ||||| Sbjct 71549 TCGCTAAAGAGTGCCAACAACAGTGCT-ATGATCTGTTTGTCCAAGCAGCAAATCAAGAG 71491 Query 20850 AAAGAATGGATCGATCATCTGTTTAAATATGGAACAATGGCAACACTGAATC-ATAAAAC 20908 ||||| ||| ||| | |||||| | ||| ||||| || |||| | | | | Sbjct 71490 AAAGATTGGGCGGATTACCTGTTTTCAGGCGGATCAATGATCGGTCTAAATCGAGATATC 71431 Query 20909 TCTGAACAATTATGTGGACTATCTGACTCGTAGCCGAATGATTTCTGCTGGTCTT-CCAT 20967 | || | ||| | || ||| | || || ||| ||| | | ||| ||| || | Sbjct 71430 T-TGTGTCAATATATTGAATATATTACCAATATCCGTATGCAAGCAG-TGGGCTTACCCT 71373 Query 20968 GTGATATTCCATCAATGCGTCATCCTATTCCATGGATTCGTAAATGGTTGAACTCCGATT 21027 | || | || | ||||||||||||||||| ||| |||||| ||| ||| Sbjct 71372 TACCTTTTGCGACACGCTCTAATCCTATTCCATGGATTAATAATTGGTTGGTCTCAGATA 71313 Query 21028 CTGTTCAAGTTGCAGCACAGGAAGCCGAACTTAGCTCTTATCTGATCGCGCAAATTGAT 21086 |||||||| || |||| ||| | ||| | ||||||||| | ||| ||||||||| Sbjct 71312 ACGTTCAAGTCGCCCCACAAGAATCAGAAATCAGCTCTTATTTAGTCGGTCAAATTGAT 71254 >seq3883 Length=158444 Score = 138 bits (152), Expect = 1e-27 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 125484 TTGAAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACGCTTCAAGATGCAG 125543 ||||||| |||||||| |||||||| || || | ||||||||||| | ||||||| Sbjct 116379 TTGAAGGTGGTCAGCACCTTAATGTTAACGTATTAAATCGTGAAACATTATTAGATGCAA 116438 Query 125544 TAAAACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGTTATGCAGTTCGTT 125603 | || |||||||||| ||||| ||| | || |||||||||||||||||||| || |||| Sbjct 116439 TGGAAAATCCTGAAAAGTATCCACAATTAACTATTCGTGTTTCTGGTTATGCCGTACGTT 116498 Query 125604 TTAATGCATTGACTCGCGAACAGCAGTTGGACGTTATCAATCGCACGTTTACGGAAGCTA 125663 |||| | || ||| || || || ||||| || | ||| |||||||| || | | Sbjct 116499 TTAACTCTTTAACTAAAGAGCAACAAAAAGACGTCATTACTCGGACGTTTACTCAATCAA 116558 Query 125664 TGTAAT 125669 |||||| Sbjct 116559 TGTAAT 116564 >seq2331 Length=68774 Score = 118 bits (130), Expect = 1e-21 Identities = 128/170 (75%), Gaps = 0/170 (0%) Strand=Plus/Minus Query 125486 GAAGGCGGTCAGCATCTTAATGTCAATGTTCTGAATCGTGAAACGCTTCAAGATGCAGTA 125545 ||||| || || || | ||||| ||||| | |||||||||| | |||| || || Sbjct 23810 GAAGGTGGACAACACTTAAATGTGAATGTATTACGTCGTGAAACGTTAGAAGACGCGGTT 23751 Query 125546 AAACATCCTGAAAAATATCCTCAACTGACCATTCGTGTTTCTGGTTATGCAGTTCGTTTT 125605 ||||| |||||||| || || ||| | || |||||||||||||||||||| || |||||| Sbjct 23750 AAACACCCTGAAAACTACCCGCAATTAACTATTCGTGTTTCTGGTTATGCGGTGCGTTTT 23691 Query 125606 AATGCATTGACTCGCGAACAGCAGTTGGACGTTATCAATCGCACGTTTAC 125655 ||| |||| || | ||||| || |||||||| ||| || ||||| Sbjct 23690 AATTCATTAACGCCAGAACAACAACGTGACGTTATTGCTCGTACTTTTAC 23641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 582695507132200