Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_028780.1 Length=167124 Score E Sequences producing significant alignments: (Bits) Value seq2372 159 4e-34 seq2331 132 5e-26 seq3883 98.7 1e-15 seq1791 84.2 2e-11 >seq2372 Length=84335 Score = 159 bits (176), Expect = 4e-34 Identities = 309/454 (68%), Gaps = 14/454 (3%) Strand=Plus/Minus Query 22764 CGTTTTTATGAAGCAGTATCTACTCGACAGATTTCATTGCCAACTCCTATTATGGCTGGT 22823 ||||||||||| || | || || | ||||| | || || || |||||||| || Sbjct 74137 CGTTTTTATGATGCGATTTCCACCTTTAAAATTTCCCTACCTACGCCAATTATGGCGGGG 74078 Query 22824 TGTCGTACTCCGACTCGACAGTTTAGTTCATGCGTTGTTATTGAGGCAGGTGATTCATTA 22883 || ||||| ||||| ||||||||||| || || | |||||| | |||| Sbjct 74077 GTGCGCACTCCAACTCGCCAGTTTAGTTCGTGTGTATTGATTGAGTGCGATGAT------ 74024 Query 22884 AAGTCTA---TCAAT-AAGGCTTCCGCTT---CAATTGTTGAATATATCTCTAAACGCGC 22936 ||||| ||||| || || |||| | |||||| |||| | || ||||||| Sbjct 74023 -AGTCTTGACTCAATTAATGCCACCGCGAGCGCTATTGTTAAATACGTATCACAACGCGC 73965 Query 22937 TGGAATTGGTATTAACGTTGGTATGATTCGTGCCGAAGGTTCTAAGATTGGCATGGGTGA 22996 ||||||||| ||||| | |||| ||| |||||| ||| | ||| || || || Sbjct 73964 TGGAATTGGCATTAATGCCGGTAAGATCCGTGCCTTAGGAAGTCCGATCCGCGGTGGCGA 73905 Query 22997 AGTACGCCATACTGGTGTTATTCCTTTTTGGAAACATTTTCAGACTGCTGTTAAATCATG 23056 || |||||||||| |||||| |||| || | || || || ||||| ||||| || Sbjct 73904 AGCGTTCCATACTGGTTGTATTCCATTTTATAAGTACTTCCAAACAGCTGTGAAATCCTG 73845 Query 23057 TTCACAGGGCGGAATTCGTGGTGGCGCTGCTACTGCTTATTATCCTATTTGGCATTTGGA 23116 ||| || ||||| | || || || || || || | | |||||| | |||||||| || Sbjct 73844 TTCTCAAGGCGGGGTACGCGGGGGGGCGGCAACGGTATTTTATCCGTTATGGCATTTAGA 73785 Query 23117 AGTTGAAAATCTTCTCGTTTTGAAAAATAACAAAGGTGTAGAAGAAAACCGCATTCGTCA 23176 ||| ||||| | | || | |||||| ||| | |||||||| ||| | || || Sbjct 73784 AGTAGAAAACTTATTGGTGCTACGCAATAACCGTGGTATTGAAGAAAATCGCGTGCGCCA 73725 Query 23177 TATGGATTATGGTGTTCAACTGAATGATCTAATG 23210 | | |||||||| || ||| | ||| | ||||| Sbjct 73724 TTTAGATTATGGGGTACAAATTAATAAATTAATG 73691 Score = 86.0 bits (94), Expect = 7e-12 Identities = 142/197 (72%), Gaps = 11/197 (6%) Strand=Plus/Minus Query 25100 GCGTGAGCTAATGAAATCTCTTTACCTCTGTTTGCATGTAA-TCAACGCATTGGAAGCTA 25158 |||||| ||| |||| ||||| |||||||| ||| |||| || | ||||||| Sbjct 71782 GCGTGAATTAAAGAAAAAACTTTATCTCTGTTTA-ATGAGCGTCAATGCGCTTGAAGCTA 71724 Query 25159 TTCGTTTTTATG-TATCTTTCGCATGTACCTTTAACTT--CCATAAGAACATGGAAATCA 25215 |||| ||||||| || |||| || || | ||| ||| || |||| ||| | | Sbjct 71723 TTCGATTTTATGTTAGCTTT-GCCTGCTCGTTTGCCTTTGCC----GAAC-GCGAATTAA 71670 Query 25216 TGGAAGGTAATGCCAAGATTATGAAGTTCATTGCACGTGATGAGCAGCTTCACCTTAAAG 25275 ||||||| |||||||| ||||| || | ||||| || ||||| |||||||||| | Sbjct 71669 TGGAAGGAAATGCCAAAATTATTAAACTGATTGCCCGCGATGAAGCTCTTCACCTTACCG 71610 Query 25276 GCACTCAATATATTATT 25292 | ||||||| ||| ||| Sbjct 71609 GTACTCAATTTATGATT 71593 >seq2331 Length=68774 Score = 132 bits (146), Expect = 5e-26 Identities = 141/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Minus Query 101903 ACCTACAGTTAAAATTGAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAAC 101962 ||| || ||||| | |||||||| |||||| | || || || || || ||||||||||| Sbjct 23826 ACCAACTATTAAAGTAGAAGGTGGACAACACTTAAATGTGAATGTATTACGTCGTGAAAC 23767 Query 101963 TCTGGAAGATGCAGTTAAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGG 102022 | ||||| || ||||| || || ||||| || ||||| | || || ||||| || || Sbjct 23766 GTTAGAAGACGCGGTTAAACACCCTGAAAACTACCCGCAATTAACTATTCGTGTTTCTGG 23707 Query 102023 TTATGCAGTTCGCTTTAACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTAC 102082 |||||| || || ||||| || | || || ||||| || || |||||||| |||||||| Sbjct 23706 TTATGCGGTGCGTTTTAATTCATTAACGCCAGAACAACAACGTGACGTTATTGCTCGTAC 23647 Query 102083 CTTCAC 102088 || || Sbjct 23646 TTTTAC 23641 >seq3883 Length=158444 Score = 98.7 bits (108), Expect = 1e-15 Identities = 125/172 (73%), Gaps = 0/172 (0%) Strand=Plus/Plus Query 101917 TTGAAGGTGGTCAACACCTGAACGTTAACGTTTTGCGTCGTGAAACTCTGGAAGATGCAG 101976 ||||||||||||| ||||| || |||||||| || ||||||||| | ||||||| Sbjct 116379 TTGAAGGTGGTCAGCACCTTAATGTTAACGTATTAAATCGTGAAACATTATTAGATGCAA 116438 Query 101977 TTAAGCATCCGGAAAAATATCCGCAGCTGACCATCCGTGTATCCGGTTATGCAGTTCGCT 102036 | | |||| ||||| ||||| || | || || ||||| || |||||||| || || | Sbjct 116439 TGGAAAATCCTGAAAAGTATCCACAATTAACTATTCGTGTTTCTGGTTATGCCGTACGTT 116498 Query 102037 TTAACTCTCTGACTCCGGAACAGCAGCGCGACGTTATCGCTCGTACCTTCAC 102088 |||||||| | ||| || || || ||||| || |||| || || || Sbjct 116499 TTAACTCTTTAACTAAAGAGCAACAAAAAGACGTCATTACTCGGACGTTTAC 116550 >seq1791 Length=77084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Plus Query 93008 TGCGGATATCGTATAATGG-TATTACCTCAGACTTCCAATCTGATGATGTGAGTTCGATT 93066 ||||| |||||||||||| ||||||||||| ||||||| ||||||||| | |||||||| Sbjct 16562 TGCGGGCATCGTATAATGGCTATTACCTCAGCCTTCCAAGCTGATGATGCGGGTTCGATT 16621 Query 93067 CTCATTATCCGCTCCAAT 93084 | | | |||||||||| Sbjct 16622 CCCGCTGCCCGCTCCAAT 16639 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 534631647201760