Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_028820.1 Length=162101 Score E Sequences producing significant alignments: (Bits) Value seq2372 190 2e-43 seq916 116 4e-21 >seq2372 Length=84335 Score = 190 bits (210), Expect = 2e-43 Identities = 360/520 (69%), Gaps = 20/520 (4%) Strand=Plus/Plus Query 140121 AGGGCTGAACAACGTGATGTAATCGTTTTTAATCAGACGTTCAATCATGAGGTCGTTAAT 140180 |||||| |||| || ||| | ||||||||||| | ||| | ||| | | ||||| Sbjct 73646 AGGGCTAAACAGCGAGATATTTTCGTTTTTAATTAAACGCTGGTACATTAATTTATTAAT 73705 Query 140181 TTGAACACCATAATCTAGGTGGCGAATACGGTTTTCATCAA---CACCTTTATTGTTCTT 140237 ||| || |||||||||| ||||| | || ||||| |||| ||| |||||| | | Sbjct 73706 TTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATTG--CGT 73763 Query 140238 CAGTACGAGCAGGTTTTCTACTTCAAGATGCCAAATCGGATAGTACAAAGTAGCTGCGCC 140297 || || | | |||||||||||| | |||||| | |||||| | | || || || || Sbjct 73764 -AGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCC 73822 Query 140298 ACCGCGAATGCCGCCTTGAGAACAAGATTTAACAGAAGCT---AAGTGAGTTTTCCAGAA 140354 ||||| | |||||||||||||| ||||| |||| | | |||| | || | | || Sbjct 73823 CCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGT-ACTTAT--AAAA 73879 Query 140355 TGGAATAACGCCTGTATG--ACGAACTTCACCAGCGCCAATCTTAGAACCTTCAGCACGA 140412 ||||||| || ||||| ||| |||| ||| ||| ||| | ||| ||||| Sbjct 73880 TGGAATACAACCAGTATGGAACG--CTTCGCCACCGCGGATCGGACTTCCTAAGGCACGG 73937 Query 140413 TACATTCCAGCGTTAACACCAATACCGGCACGTTTGCTGATA--TATTTGATGATTGCTT 140470 | | || || |||| ||||| || || |||| ||||| ||||| | || || Sbjct 73938 ATCTTACCGGCATTAATGCCAATTCCAGCGCGTT--GTGATACGTATTTAACAATAGCGC 73995 Query 140471 TGTTTACTGCATTAATACTGTCAAGACTATCGCCGCCTTCAATAACAACGCAAGAACTGA 140530 | |||||||| |||||||||||| ||| ||||| | || || ||||| | Sbjct 73996 TCGCGGTGGCATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAACTAA 74055 Query 140531 ACTGGCGAGTCGGAGTACGTACACCGGCCATAATTGGAGTAGGCAGAGAAATCTGACGTT 140590 |||||||||| ||||| || || || ||||||||||| ||||| || ||||| | | Sbjct 74056 ACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATTTTAAAGG 74115 Query 140591 TAGATACGGCATTATAGAAACGGATAATATGCTTAAGACG 140630 | || | |||| ||| ||||| |||| | || ||||| Sbjct 74116 TGGAAATCGCATCATAAAAACGTTTAATGTAATTGAGACG 74155 >seq916 Length=289624 Score = 116 bits (128), Expect = 4e-21 Identities = 73/79 (92%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 67178 TGGTGGCCCTTACTGGATTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTATCC 67237 ||||||||| ||||||| |||||||||||||||||||||||||||||||||||||| || Sbjct 161546 TGGTGGCCCCTACTGGACTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTCTGACC 161605 Query 67238 ATCTGAGCTAAAGGGCCTT 67256 | ||||||||| ||||||| Sbjct 161606 AACTGAGCTAAGGGGCCTT 161624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 518559164116040