Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_028829.1 Length=248088 Score E Sequences producing significant alignments: (Bits) Value seq1913 219 7e-52 seq2372 127 3e-24 >seq1913 Length=212763 Score = 219 bits (242), Expect = 7e-52 Identities = 1069/1658 (64%), Gaps = 76/1658 (5%) Strand=Plus/Minus Query 125165 TTCACCAGACCAACCACA--CGTA-CACTGATCAATCGGGGTATTCGTACCGAAGTAAGC 125221 ||||||| ||||||| | || |||| |||||| ||||||||||| || | |||| Sbjct 33408 TTCACCACTATAACCACATTCATAACACTCATCAATAGGGGTATTCGTCCCATAATAAGG 33349 Query 125222 TACTTTAGTGTAAGCATAATCCCATACGCGCTCTAGACCTTTGATGTTGTCTCGCATATT 125281 || | || |||||||||||| |||| |||| | || | ||||||| Sbjct 33348 AACGCGGCTATAGCTATAATCCCATACATCTTCTAACGCTTTAAGATTATGCTGCATATT 33289 Query 125282 CGGGAACTCAGCATAACAGATGAAACCACCGTTTGCATGAATTGGGTATGCAGCTTCAAA 125341 ||| | ||| ||||||||||||| ||||| ||||| || || || || |||||| Sbjct 33288 AGGGTATTCACCATAACAGATGAAGCCACCATTTGCGATCATAGGATAGGCTTTTTCAAA 33229 Query 125342 ATCAATTTTCTCAAATGGGTTCACTTTCTTGAACACGTCTAAGTG-AAACGAGTTTGTGT 125400 || | ||| | | | |||| ||||| || ||| || | || |||| | || || | Sbjct 33228 CTCTAATTTTTGATAAGGGTCAACTTTTTTCTCCACATCCAGATGGAAACTA-TTCGTAT 33170 Query 125401 AATAGTCTTTGTCATTGATACCTGTAATAACACCGTATTTCTCTTGGTCGAGACGACAGA 125460 | || |||| ||||| | ||||| ||||| || ||| || || | ||| || | Sbjct 33169 AGTAACCTTTATCATTCACACCTGAAATAATCCCAAATTCCTGCACATCTAAACGGCAAA 33110 Query 125461 AACGATCACATAGCGATTCACTTGGTGTACTGTACAGACTGAAACCGTAGCCCGTCAGTT 125520 ||||||||||||| ||||||||| ||||| || | ||| || ||||| || || Sbjct 33109 AACGATCACATAGATTTTCACTTGGCGTACTATATAAACTAAATCCGTAACCTGTTTCCG 33050 Query 125521 CTTTCCATGCATCGGTGTA-CGC-TC---TAAGAGTTTCCACAATCTTTTCAGCGAGGAA 125575 ||||| ||| | | || ||| || ||| | || ||||| ||| ||| Sbjct 33049 CTTTC----CATTGTTCTACCGCATCACGTAATCG-TTGTACAAT------AGCTAGGCC 33001 Query 125576 TTGTTTGTGTTGTGACTCA--AACGTATGCATGTCT-TTATCTGGCGAAAGCAACGT-TA 125631 || || | || |||| | || | | ||| | ||||| |||| | | | | Sbjct 33000 TTTTTCCCGCAATGTCTCACTATCGAAAGGATGAATCTTATCGCTATAAAG-AGCTTGCA 32942 Query 125632 CTGCTTCGTGTAACCCGATATAACCAAGCGAGATACTTGAACGACCGTGTTTGAAAACTT 125691 |||||| || | || |||||||| | || ||| | ||||| | |||||||| || Sbjct 32941 ATGCTTCATGGATACCAATATAACCTAATGAAATAGAGGCTCGACCATCTTTGAAAATTT 32882 Query 125692 CACTGACTTTATCAGTTGGCTTCAAGCGTACGCCCATTGCACCTTCACAGTATAGAATTG 125751 || ||||| | || || || ||||| ||| ||||| |||| || | Sbjct 32881 GTGCCACACTATCATCTTCGTTTAATCGAACGCCACATGCGCCTTCCATATATAAGATAG 32822 Query 125752 GAGCAACTGATGCAGTTACATCATCAAAACGCTTAATACGCAACATCAATGCTTCGTAAG 125811 | |||||| ||| | |||| || | |||| |||||| ||| ||||||| | Sbjct 32821 GTGCAACTCGTGCTTTAACATTTTCTAGACGCGCAATACGTGTCATTAATGCTTTACGCG 32762 Query 125812 CTAGTTTACAACGCTCGTGTAAGATCTCGAAGAAGCGTTCAGTATCACCCGATGCTTCAA 125871 ||| |||| | | || || | |||| ||| |||||| |||||||| Sbjct 32761 CTAAGACCAAACGTTGATCCAATATTTTCCAGAATCGTGACTCATCACCTTTTGCTTCAA 32702 Query 125872 TAGCAATACGCGGGATATTGATTGAGACGACGCCTAAGTTATTACGACCATC--GAATAC 125929 | |||||||| || ||||| | | || ||||| |||||||| ||||| |||| Sbjct 32701 TGGCAATACGAGGAATATTTAAACTAATTACCCCTAAATTATTACGCCCATCATGAAT-T 32643 Query 125930 CGTTTCACCATCTTCGTTCTTCCAGTCACCCAAGAATGAGCGACAGCCCATTGGAGACTT 125989 | | | |||||||| ||| | | |||| ||||| |||||||||||||| | || Sbjct 32642 TGCTGC-CCATCTTC-TTCAT--AAACACCTAAGAAACTACGACAGCCCATTGGGGTTTT 32587 Query 125990 AAACCCACCAGTCGTTTCAACTAGTTTGTCATAGTTCAAAATGTCTGGGTACATACGCTT 126049 ||| || || | || | || ||||| || | || || || ||||| || || Sbjct 32586 AAATGATCCTGTTACCTTGACCACTTGATCATAATTAAGGATATCAGGATACATTCGTTT 32527 Query 126050 ACTTGCACATTCAAGAGCTAACTTTTTGATGCCGTAGCA--CGGGTCGCCTTCTTTCAGA 126107 | ||||| || | ||||| | ||| || |||| | | || | || || Sbjct 32526 AGCGGCACACTCTAATGCTAATTGTTTAAT--CGTATAATTTTGATCTGTTGGCTTATGA 32469 Query 126108 TTCACGCCGTCTCTCAATGTGAAAACAAGCTTAGGGAAAATAGCAGTTTTCTTAGTCTTA 126167 || || || ||| | | | || || | ||||| |||| || ||||| | | | || Sbjct 32468 TTAACCCCATCTTTGATCGCAAAGACTAATTTAGGAAAAACTGCCGTTTTATGATTTTTT 32409 Query 126168 CCTAGACCTGCAATACG-ATTCTGAAGAATACTTTTTTGAATAAGTTTTTCTTCCCACGA 126226 |||| ||| ||||||| | | ||| || || |||||| | | |||||| Sbjct 32408 CCTAAACCAACAATACGCACACGTAAG-ATCGATTCTTGAATTAAGCGTGATTCCCAACT 32350 Query 126227 CGTACCTAACCCGAAGTTGATTGTCGTGAATGGTGTCTGACCGTTTGAAGTCTGCATCGT 126286 || ||||| || || | ||| || || ||||| || || | ||| || | ||| Sbjct 32349 GGTGCCTAAACCAAATCCAAATGTAACAAAAGGGGTCTGTCCATTCGCAGTATGTAGCGT 32290 Query 126287 ATTGACTTGATATTCAAACGTCTGGAATGCATCGAACGTTTCCTTTTCAACACGCTTTCG 126346 |||||||| |||||| |||| || |||||||| | || |||||| | || Sbjct 32289 ATTGACTTCATATTCTAACGATTGAAATGCATCATAACACTCTTTTTCA------GTACG 32236 Query 126347 TGCAAAGATAGC--AGCTTTAGA-ATCAGAGTCGGGATGTTCTTCTCGAC--CTACTTCG 126401 || | |||| || ||| || |||| || || | | ||| | ||| | || Sbjct 32235 TG---ACTTAGCGTAGTTTTCGATATCA-----GGAATTTGCCACTCTTCGGCTA-TACG 32185 Query 126402 AGCCATTTATAATATGAC-TTACGA-ACATAAGGTGCTAGGACTTCGTCGATTCTATTGA 126459 | | || | | || || || ||| ||| | || || ||||| || || | ||| | Sbjct 32184 A-CGATGTTTTTCATAACTTTTCGATACAAATTTAGCCAGAACTTCATCAATACGATTAA 32126 Query 126460 TCGTGTTACCGCCGTAGATATGGCTACTTACTTGCTGAATAATCTG---AGTTACAACAG 126516 | ||| | || || || |||||||| |||||| |||||||| |||||| | | Sbjct 32125 TGGTGGTGCCACCATAAATATGGCTGGCTACTTGGGCTATAATCTGTGCGGTTACAGCGG 32066 Query 126517 TGGCAGCAGTGCTAATACTGTTTGGTTCTTCGATTTCAGCATTACCCATTTTGAAGCCGC 126576 || ||||| ||| || || ||| ||||||||||| |||||||| || | | Sbjct 32065 TG---GCAGTTGAAATTGATTTAGGCGGTTCAATTTCAGCATTTCCCATTTTAAAAC--C 32011 Query 126577 CTT--CAAACATGCCTTTGATATCAATAAGCATACAGTTGAATTGCGGGAATAATGGACT 126634 ||| | ||| || | | |||||| ||||| ||||| || ||||| || ||| Sbjct 32010 CTTGGTTAGCATTCCATCTAAATCAATTAGCATGCAGTTAAACATAGGGAAAAAGGGAGC 31951 Query 126635 GTAGTCAAGGTCATGAAAATGAATATCGCCGTCGAT-ATGTGCATCTGCAATATGCTTCG 126693 || || || |||||| ||||||| || || |||| ||| ||| | ||| | || | Sbjct 31950 ATAATCCAGATCATGATAATGAATTTCACC-ACGATCATGCGCAATAGAAATTTCTTTAG 31892 Query 126694 GT-AGATAGTCTTCAAGTGCGTAATGTTTCGACACTGTGCCAGCTACTAAGTCACGCATT 126752 || ||||| | || || |||||||| | || | || |||| ||| || ||| Sbjct 31891 GTAAGATA-TATTGCTTAGCATAATGTTTAGCAACGATACCTGCTAATAAATCGCGCTGA 31833 Query 126753 GTAGGGATTACTTTCGAATCTTTATTTGCATTCTCTTT 126790 ||||| || ||||| ||||||||| ||||| || || Sbjct 31832 GTAGGAATAACTTTACTATCTTTATTAGCATTTTCGTT 31795 >seq2372 Length=84335 Score = 127 bits (140), Expect = 3e-24 Identities = 313/470 (67%), Gaps = 10/470 (2%) Strand=Plus/Plus Query 236196 AGGACTGAATAGCGTGATGTAATCGTTATTCACAAGACGCTCAAGCATCAATCGACTGAT 236255 ||| || || |||| ||| | ||||| || | | ||||| ||| ||| | | || Sbjct 73646 AGGGCTAAACAGCGAGATATTTTCGTTTTTAATTAAACGCTGGTACATTAATTTATTAAT 73705 Query 236256 TGATACACTGTAGTCAAGATGACGAATACGGTTTTCTTCAACACCTTTGTTGTTCTTCAG 236315 | ||| | || || | ||| || | || |||||||||| ||| ||| || || Sbjct 73706 TTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATTGCGTAG 73765 Query 236316 AACTAACAGTTTTTCAACTTCTAAGTGCCAAATCGGGTAAGTTAGAGTCGCAGCACCACC 236375 || || | ||||| |||||||| ||||| | ||| ||| || || || || || || Sbjct 73766 CACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCCCCC 73825 Query 236376 ACGTACACCACCTTGAGAACACGATTTAACCGCAGTTTGAAAGTGTTTCCAGAATGGAAT 236435 ||||| || ||||||||||| ||||| || || ||||| |||| || | |||||||| Sbjct 73826 GCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAATGGAAT 73885 Query 236436 TACACCAGTGTG--ACGAATC-TCAC--CTGAACGAACGACTGCCCCTTCAGCACGAATC 236490 |||||| || ||| || ||| | || || |||| ||| ||||| ||| Sbjct 73886 ACAACCAGTATGGAACGCTTCGCCACCGCGGATCG---GACT--TCCTAAGGCACGGATC 73940 Query 236491 GCACCGCCATTCACACCGATACCTGCACGCTTACTAATGTAACTTACAATTGATTTAGCC 236550 |||| |||| | || || || || || | | ||| | ||||| | | || Sbjct 73941 TTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAATAGCGCTCGCG 74000 Query 236551 ACTTCATTGATTGAATGCAAAGAGTCGCCTGATTCAATCTTAACACACGAACTAAACTGG 236610 |||| ||||| | | | || | | |||||| |||||||||||||||||| Sbjct 74001 GTGGCATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAACTAAACTGG 74060 Query 236611 CGTGTCGGGGTACGAACGCCTGCCATAATCGGTGTCGGTAATGAAAGTTT 236660 || || || || || || || |||||||| || || |||| |||| ||| Sbjct 74061 CGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATTTT 74110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 793698444046720