Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_028840.1 Length=111751 Score E Sequences producing significant alignments: (Bits) Value seq3883 138 8e-28 seq2331 134 1e-26 >seq3883 Length=158444 Score = 138 bits (152), Expect = 8e-28 Identities = 142/186 (76%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 106573 TTGAAGGTGGTCAACACCTAAATGTCAATGTGTTAAGTCGTGATCAGCTTTTGGATGCAC 106632 ||||||||||||| ||||| ||||| || || |||| |||||| | || |||||| Sbjct 116379 TTGAAGGTGGTCAGCACCTTAATGTTAACGTATTAAATCGTGAAACATTATTAGATGCAA 116438 Query 106633 AGAAACATCCTGAAAAATACCCTCAATTAACTATCCGTGTTTCAGGATACGCTGTACGTT 106692 | || |||||||||| || || ||||||||||| |||||||| || || || ||||||| Sbjct 116439 TGGAAAATCCTGAAAAGTATCCACAATTAACTATTCGTGTTTCTGGTTATGCCGTACGTT 116498 Query 106693 TTAATGCACTGACGCGTGAACAACAGAACGACGTTATTAGTCGTACATTTACTCAGGCGA 106752 |||| | | || || ||||| || ||||| |||| ||| || |||||||| | | Sbjct 116499 TTAACTCTTTAACTAAAGAGCAACAAAAAGACGTCATTACTCGGACGTTTACTCAATCAA 116558 Query 106753 TGTAAT 106758 |||||| Sbjct 116559 TGTAAT 116564 >seq2331 Length=68774 Score = 134 bits (148), Expect = 1e-26 Identities = 134/172 (78%), Gaps = 4/172 (2%) Strand=Plus/Minus Query 106575 GAAGGTGGTCAACACCTAAATGTCAATGTGTTAAGTCGTGATCAGCTTTTGGATGCACAG 106634 |||||||| |||||| ||||||| ||||| ||| ||||||| | | || | | | | | Sbjct 23810 GAAGGTGGACAACACTTAAATGTGAATGTATTACGTCGTGA--AACGTTAGAAGACGCGG 23753 Query 106635 --AAACATCCTGAAAAATACCCTCAATTAACTATCCGTGTTTCAGGATACGCTGTACGTT 106692 ||||| |||||||| ||||| ||||||||||| |||||||| || || || || |||| Sbjct 23752 TTAAACACCCTGAAAACTACCCGCAATTAACTATTCGTGTTTCTGGTTATGCGGTGCGTT 23693 Query 106693 TTAATGCACTGACGCGTGAACAACAGAACGACGTTATTAGTCGTACATTTAC 106744 ||||| || | |||| |||||||| ||||||||| |||||| ||||| Sbjct 23692 TTAATTCATTAACGCCAGAACAACAACGTGACGTTATTGCTCGTACTTTTAC 23641 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 357454180726688