Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_028847.1 Length=170527 Score E Sequences producing significant alignments: (Bits) Value seq2372 123 3e-23 >seq2372 Length=84335 Score = 123 bits (136), Expect = 3e-23 Identities = 326/498 (65%), Gaps = 0/498 (0%) Strand=Plus/Plus Query 143866 AGGACTAAACAACGTGATGTAATCATTTTTACCGAAACGTTCCATCATAAGGTCGTTCAT 143925 ||| ||||||| || ||| | || |||||| ||||| | ||| | | || || Sbjct 73646 AGGGCTAAACAGCGAGATATTTTCGTTTTTAATTAAACGCTGGTACATTAATTTATTAAT 73705 Query 143926 CTGGATTCCGTAGTCCATATGGCGAATACGGTTCTCATCGACACCTTTGTTGTTTTTCAG 143985 || | || || || | |||||| | || || || || | ||| ||| || || Sbjct 73706 TTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATTGCGTAG 73765 Query 143986 AACGAGCAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCC 144045 || | | ||||| ||||| |||||||| | |||||| | | || || || || || Sbjct 73766 CACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCCCCC 73825 Query 144046 ACGGATTCCACCTTGTGAACATGATTTAACAGCAGTCTGGAAATGTTTCCAGAATGGAAT 144105 || | || ||||| ||||| ||||| ||||| || ||||| | || | |||||||| Sbjct 73826 GCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAATGGAAT 73885 Query 144106 AACACCGGTATGCTTGACTTCGCCCATGCCAATACGAGAACCTTCAGCACGAATCATACC 144165 | ||| ||||| ||||||| || || || ||| ||||| ||| |||| Sbjct 73886 ACAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTAAGGCACGGATCTTACC 73945 Query 144166 AACGTTGATACCAATACCGGCACGTTTAGAAATGTATTCAATTATTGAGTTAGCAGTTTT 144225 | || || ||||| || || |||| || | ||||| || || | | | || || Sbjct 73946 GGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAATAGCGCTCGCGGTGGC 74005 Query 144226 GTTAATAGATTTCAGTGAGTCGCCTGCTTCAATAACCACACAAGAACTAAATTGACGGGT 144285 ||||| || | || || | ||||| | ||||| |||||||| || || || Sbjct 74006 ATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAACTAAACTGGCGAGT 74065 Query 144286 TGGTGTACGTGCTCCAGCCATAATAGGAGTTGGTAATGAAACCTGACGGGTACTTACAGC 144345 ||| || || | || |||||||| || || |||| |||| | | ||| | || Sbjct 74066 TGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATTTTAAAGGTGGAAATCGC 74125 Query 144346 ATCATAAAAACGAATAAT 144363 |||||||||||| |||| Sbjct 74126 ATCATAAAAACGTTTAAT 74143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545520490510680