Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_028881.1 Length=170473 Score E Sequences producing significant alignments: (Bits) Value seq2372 118 1e-21 >seq2372 Length=84335 Score = 118 bits (130), Expect = 1e-21 Identities = 247/368 (67%), Gaps = 0/368 (0%) Strand=Plus/Plus Query 142934 TTTTCAACTTCCAAATGCCAAATAGGATAATAAGCAGTAGCAGCGCCGCCACGGATTCCA 142993 ||||| ||||| |||||||| | |||||| | | || || || || || || | || Sbjct 73776 TTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCCCCCGCGTACCCCG 73835 Query 142994 CCTTGTGAACATGATTTAACTGCAGTCTGGAAATGCTTCCAGAATGGAATAACACCGGTA 143053 ||||| ||||| ||||| || || || ||||| | ||| | ||||||||| ||| ||| Sbjct 73836 CCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAATGGAATACAACCAGTA 73895 Query 143054 TGTTTGACTTCACCCATACCAATACGAGAACCTTCAGCACGAATCATACCAACGTTGATA 143113 || |||| || | || || ||| ||||| ||| |||| | || || Sbjct 73896 TGGAACGCTTCGCCACCGCGGATCGGACTTCCTAAGGCACGGATCTTACCGGCATTAATG 73955 Query 143114 CCAATACCTGCACGTTTAGAAATATACTCGATTATTGAGTTAGCAGTTTTATTAATTGAT 143173 ||||| || || |||| || | || | | || | | | || || ||||||||| Sbjct 73956 CCAATTCCAGCGCGTTGTGATACGTATTTAACAATAGCGCTCGCGGTGGCATTAATTGAG 74015 Query 143174 TTCAGCGAGTCACCTGCTTCAATAACAACGCAAGAACTAAACTGACGGGTCGGGGTACGA 143233 | || ||| | ||||| | || || ||||||||||| || || || || || Sbjct 74016 TCAAGACTATCATCGCACTCAATCAATACACACGAACTAAACTGGCGAGTTGGAGTGCGC 74075 Query 143234 GCACCAGCCATAATAGGAGTAGGCAATGAAATCTGACGGGTGCTAACAGCATCATAAAAA 143293 | || |||||||| || ||||| | ||||| | | |||| || |||||||||||| Sbjct 74076 ACCCCCGCCATAATTGGCGTAGGTAGGGAAATTTTAAAGGTGGAAATCGCATCATAAAAA 74135 Query 143294 CGAATAAT 143301 || |||| Sbjct 74136 CGTTTAAT 74143 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 545347702518120