Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_028925.1 Length=170822 Score E Sequences producing significant alignments: (Bits) Value seq2372 132 5e-26 >seq2372 Length=84335 Score = 132 bits (146), Expect = 5e-26 Identities = 309/463 (67%), Gaps = 10/463 (2%) Strand=Plus/Plus Query 143094 TTATTAAGCTGGACACCATAGTCCATATGTCTGATACGGTTTTCTTCAACGCCCTTGTTG 143153 ||||||| || || ||||| || | ||| | | || |||||||||| || ||| Sbjct 73698 TTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTA 73757 Query 143154 TTCTTCAGAACGAGTAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGCAGTAGCA 143213 || || || | ||| ||||| ||||| ||||||||||| |||||| | | || || Sbjct 73758 TTGCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCC 73817 Query 143214 GCGCCGCCACGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATGTTTCCAG 143273 || || || || | || ||||| ||||||||||| ||||| |||||||| | || | Sbjct 73818 GCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAA 73877 Query 143274 AACGGAATAACACCAGTATGGCGAACTTCACCCATACCGATTTTCGAA---CCTTCAGCA 143330 || |||||| |||||||||| |||| || |||| ||| | ||| ||| Sbjct 73878 AATGGAATACAACCAGTATGGAACGCTTCGCC---ACCGCGGATCGGACTTCCTAAGGCA 73934 Query 143331 CGAATCATACCAACGTTGATGCCGATACCCGCACGCTTACTGATA--TATTCGATGATTG 143388 || ||| |||| | || ||||| || || | ||| | ||||| |||| | || | Sbjct 73935 CGGATCTTACCGGCATTAATGCCAATTCCAG--CGCGTTGTGATACGTATTTAACAATAG 73992 Query 143389 AATTGGCCGTCTTATTAATTGACTTCAGGGAGTCAGCAGCTTCGATAACCACACAGGAAC 143448 | || || ||||||||| | || ||| | || || | ||||| |||| Sbjct 73993 CGCTCGCGGTGGCATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAAC 74052 Query 143449 TGAACTGCCTGGTAGGTGTTCTGGCGCCCGCCATGATGGGCGTGGGCAACGAAACCTGTC 143508 | ||||| | || || || | | |||||||| || ||||| || | |||| | Sbjct 74053 TAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATTTTAA 74112 Query 143509 TTGTGGATACTGCATCATAAAAACGGCAAACGTGCTTCAGACG 143551 ||||| | |||||||||||||| || || || ||||| Sbjct 74113 AGGTGGAAATCGCATCATAAAAACGTTTAATGTAATTGAGACG 74155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 546464424914480