Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_028927.1 Length=167298 Score E Sequences producing significant alignments: (Bits) Value seq2372 165 9e-36 seq2331 136 4e-27 seq3883 105 7e-18 seq1791 84.2 2e-11 >seq2372 Length=84335 Score = 165 bits (182), Expect = 9e-36 Identities = 317/463 (68%), Gaps = 16/463 (3%) Strand=Plus/Plus Query 43552 CATTAGATCATTCAGTTGAACACCATAATCCATATGACGAATGCGGTTTTCTTCTACACC 43611 ||||| | ||| | ||| || |||||||| | ||| || | ||| |||||||| | ||| Sbjct 73691 CATTAATTTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACC 73750 Query 43612 TTTGTTATTTTTCAAAAC-AAGAAGATTTTCAACTTCCAAATGCCAAATAGGATAATAAG 43670 |||||| | || || ||| ||||| ||||| |||||||| | |||||| | Sbjct 73751 ACGGTTATTGCGTAGCACCAATAAG-TTTTCTACTTCTAAATGCCATAACGGATAAAATA 73809 Query 43671 CAGTAGCAGCGCCGCCACGAATTCCACCTTGTGAGCATGATTTAACAGCAGTCTGAAAAT 43730 | || || || || || || | || ||||| || || ||||| ||||| || || || | Sbjct 73810 CCGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGT 73869 Query 43731 GTTTCCAAAAAGGAATAACACCAGTATGGCGTACTTCACCCATGCCAATCTTAGAACCTT 43790 || |||| |||||| |||||||||| |||| || || ||| | ||| Sbjct 73870 ACTTATAAAATGGAATACAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTA 73929 Query 43791 CGGCACGAATCATACCAACGTTAATACCAATTCCAGCACGTTTGGAGATATATTCAACAA 43850 |||||| ||| |||| | ||||| ||||||||||| |||| || | |||| ||||| Sbjct 73930 AGGCACGGATCTTACCGGCATTAATGCCAATTCCAGCGCGTTGTGATACGTATTTAACAA 73989 Query 43851 TTG---AAGCGGAAGCCTT-ATTGA---TAGACTTTAATGAATCACCTGCCTCAATAACA 43903 | | |||| || || ||||| ||||| |||| | |||||| | Sbjct 73990 TAGCGCTCGCGGTGGCATTAATTGAGTCAAGACT-------ATCATCGCACTCAATCAAT 74042 Query 43904 ACACATGAACTAAACTGTCGAGTCGGAGTACGACAACCAGCCATAATAGGAGTTGGTAAT 43963 ||||| ||||||||||| ||||| ||||| || || |||||||| || || |||| Sbjct 74043 ACACACGAACTAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGG 74102 Query 43964 GAAATCTGTCGAGTAGATACTGCTTCATAAAAACGGATAACGT 44006 ||||| | || || | || ||||||||||| ||| || Sbjct 74103 GAAATTTTAAAGGTGGAAATCGCATCATAAAAACGTTTAATGT 74145 >seq2331 Length=68774 Score = 136 bits (150), Expect = 4e-27 Identities = 137/178 (77%), Gaps = 0/178 (0%) Strand=Plus/Plus Query 131513 GTAAAGGTACGAGCAATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAACT 131572 ||||| ||||||||||||||||| || || ||||| || || | || ||||| || || Sbjct 23641 GTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGAATTAAAACGCACC 23700 Query 131573 GCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATCT 131632 |||||||| || ||||| || || | ||||| || ||||| || || ||||| || ||| Sbjct 23701 GCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTGTTTAACCGCGTCT 23760 Query 131633 TCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAATTTTAA 131690 || | ||||||||||| | || || || || | |||||| |||||||| | ||||| Sbjct 23761 TCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACCTTCTACTTTAA 23818 >seq3883 Length=158444 Score = 105 bits (116), Expect = 7e-18 Identities = 127/173 (73%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 131512 AGTAAAGGTACGAGCAATAACGTCGCGCTGCTGTTCCGGAGTCAGAGAGTTAAAGCGAAC 131571 |||||| || |||| ||| ||||| || || || ||| | ||||||||| || || Sbjct 116551 AGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTTTAGTTAAAGAGTTAAAACGTAC 116492 Query 131572 TGCATAACCGGATACACGGATGGTCAGCTGCGGATATTTTTCCGGATGCTTAACTGCATC 131631 |||||||| || ||||| || || | || ||||| ||||| |||| | | |||||| Sbjct 116491 GGCATAACCAGAAACACGAATAGTTAATTGTGGATACTTTTCAGGATTTTCCATTGCATC 116432 Query 131632 TTCCAGAGTTTCACGACGCAGAACGTTAACGTTCAGGTGTTGACCACCTTCAA 131684 | | ||||||||| | |||||||| || ||||| ||||||||||||| Sbjct 116431 TAATAATGTTTCACGATTTAATACGTTAACATTAAGGTGCTGACCACCTTCAA 116379 >seq1791 Length=77084 Score = 84.2 bits (92), Expect = 2e-11 Identities = 66/78 (85%), Gaps = 1/78 (1%) Strand=Plus/Minus Query 140749 ATTGGAGCGGATAATGAGAATCGAACTCACATCATCAGATTGGAAGTCTGAGGTAATA-C 140807 |||||||||| | | ||||||||| | ||||||||| ||||||| ||||||||||| | Sbjct 16639 ATTGGAGCGGGCAGCGGGAATCGAACCCGCATCATCAGCTTGGAAGGCTGAGGTAATAGC 16580 Query 140808 CATTATACGATATCCGCA 140825 ||||||||||| ||||| Sbjct 16579 CATTATACGATGCCCGCA 16562 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 535188408511120