Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_028940.1 Length=170286 Score E Sequences producing significant alignments: (Bits) Value seq2372 134 2e-26 >seq2372 Length=84335 Score = 134 bits (148), Expect = 2e-26 Identities = 344/517 (67%), Gaps = 19/517 (4%) Strand=Plus/Plus Query 145188 GACATCAGGA---CTAAAAAGAGTAATGTAATCGTTTTTAATCAGACGTTCAATCATCAA 145244 |||||||| | ||||| || | || | ||||||||||| | ||| | ||| || Sbjct 73637 GACATCAGAAGGGCTAAACAGCGAGATATTTTCGTTTTTAATTAAACGCTGGTACATTAA 73696 Query 145245 ATCATTGATTTGAATTCCATAATCAAGATGCCTGATTCGATTTTCTTCTACGCCTTTGTT 145304 | ||| ||||| | |||||||| | ||| | | ||||||||||| | || ||| Sbjct 73697 TTTATTAATTTGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTT 73756 Query 145305 GTTTTTAAGGACTAAAAGATTTTCTGCTTCAAGGTGCCACATTGGGTAATATAATGTTGC 145364 || || || || | |||||| |||| | ||||| | || ||| ||| ||||| Sbjct 73757 ATTGCGTAGCACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGC 73816 Query 145365 CGCACCACCACGAATTCCACCTTGAGAACAACTTTTAACAGAAG---CCAAGTGAGTTTT 145421 ||| || || || | || ||||||||||| ||| |||| | |||| | || | Sbjct 73817 CGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGT-ACTTAT 73875 Query 145422 CCAGAATGGAATAACACCCGTATGCCGCACTTCACCGTGACCAATCTTAGAACCTTCAGC 145481 | ||||||||| ||| ||||| | |||| || | ||| | ||| || Sbjct 73876 --AAAATGGAATACAACCAGTATGGAACGCTTCGCCACCGCGGATCGGACTTCCTAAGGC 73933 Query 145482 GCGATACATTCCGGCGTTAACACCAATACCAGCGCGTTTACTGATA--TATTTGATAAT- 145538 || | | ||||| |||| ||||| |||||||||| ||||| ||||| | ||| Sbjct 73934 ACGGATCTTACCGGCATTAATGCCAATTCCAGCGCGTT--GTGATACGTATTTAACAATA 73991 Query 145539 --GCTTTCGTTCACTTTGTTAATTGAATTTAGCGAATCGCCACCTTCAATTACTACACAT 145596 ||| || | | |||||||| | || ||| | | ||||| | |||||| Sbjct 73992 GCGCTCGCGGTGGC---ATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACAC 74048 Query 145597 GAACTGAATTGACGAGTTGGTGTACGTACACCTGCCATAATAGGAGTAGGCAAAGAAATT 145656 ||||| || || |||||||| || || || || |||||||| || ||||| | |||||| Sbjct 74049 GAACTAAACTGGCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATT 74108 Query 145657 TGACGTTTTGATACAGCATTATAAAAACGAATAATGT 145693 | | | || | |||| ||||||||| |||||| Sbjct 74109 TTAAAGGTGGAAATCGCATCATAAAAACGTTTAATGT 74145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 544749344099440