Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_028943.1 Length=29237 Score E Sequences producing significant alignments: (Bits) Value seq916 89.7 1e-13 >seq916 Length=289624 Score = 89.7 bits (98), Expect = 1e-13 Identities = 325/504 (64%), Gaps = 16/504 (3%) Strand=Plus/Plus Query 23034 TACCGTCAGAATTTCAGCCAGCGTGAGCTGATGGTCATCTGGCCGGATTTCCTCGCATGG 23093 |||||| | ||||| | ||| || | ||||| || ||||| ||||| ||| | Sbjct 155470 TACCGTAAAAATTTTGGTGCGCGCGAAGTTATGGTGATTTGGCCTGATTTTATCGGTTTT 155529 Query 23094 GATACGGTCACGAGTACCACCGCCACCGCGT---ATGCCACTGCCCGTGCGCTGGGACTG 23150 |||| |||| | ||| || || | | |||| || || ||||| | ||| | Sbjct 155530 GATA---TCACAATATCCAACGAAACTACTTTTTATGCTACCGCTCGTGCAGTTGGATTA 155586 Query 23151 CGTGCCAAAATCGACCAGGAGCAGGGCTGGCATAAAACGCTGTCCAACGTCGGGGTAAAC 23210 || || ||||| |||||| | || ||||| ||||| || || || | |||||| Sbjct 155587 CGCGCTAAAATTGACCAGCAAATTGGTTGGCACAAAACCCTATCAAATATGCCGGTAAAT 155646 Query 23211 GGTGTTACCGGCATCAGCGCATCTGTATTCTGGGATTTGCAGGAGTCCGGCACCGATGCT 23270 || || || || || || | ||| | ||||||||| |||| ||||||||||| Sbjct 155647 GGGGTAACGGGTATTAGTAAAGATGTTTACTGGGATTTACAGGCTGAAAGCACCGATGCT 155706 Query 23271 GACCTGCTGAACGAGTCAGGCGTCACAACGCTGATTCGTCGTGACGGTTTCCGCTTCTGG 23330 || || || | || ||||| ||||| ||||| || | || || ||| Sbjct 155707 AGTTATCTCAATGAAAATGAAGTAACAACATTGATTTGTCGTAGTGGATATCGTTTTTGG 155766 Query 23331 GGTAACCGTACCTGCTCTGATGACCCGCTGTTCCTCTTTGAAAACTACACCCGCACCGCG 23390 ||| ||||| || |||| || | || | |||||||||||||| || || | Sbjct 155767 GGTTCTCGTACTTGTACTGAAGATGGCTTTTTTATGTTTGAAAACTACACTCGAACAACT 155826 Query 23391 CAGGTGCTGGCCGACACGATGGCTGAGGCGCACATGTGGG---CGGTGGACAAGCCCATC 23447 || || ||||| ||| | || || || || ||||| | | || || || || Sbjct 155827 CAAGTTCTGGCGGACTCAATCGCGGATGC---CATGTTTGATTTTATTGATAAACCGATG 155883 Query 23448 ACCGCAACGCTGATTCGCGACATCGTTGA--CGGCATCAATGCCAAATTCCGTGAGCTGA 23505 ||| | | || ||||| ||||| ||| | ||| ||| ||||| || |||| Sbjct 155884 CACGCCTCATTAATCAAAGACATTGTTGAATCGG--TAAATAACAAGTTCCGAGAACTGA 155941 Query 23506 AAACAAACGGCTATATCGTGGATG 23529 || |||| ||||||||| | |||| Sbjct 155942 AATCAAATGGCTATATCATTGATG 155965 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 93430631944842