Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_028957.1 Length=171541 Score E Sequences producing significant alignments: (Bits) Value seq2372 118 1e-21 >seq2372 Length=84335 Score = 118 bits (130), Expect = 1e-21 Identities = 339/516 (66%), Gaps = 14/516 (3%) Strand=Plus/Plus Query 142788 GGACTAAACAGAGTGATGTAATCATTCTTAGCCAGACGTTCCATCATCAAGTTATTCAAC 142847 || |||||||| | ||| | || || ||| | ||| | ||| || ||||| | Sbjct 73647 GGGCTAAACAGCGAGATATTTTCGTTTTTAATTAAACGCTGGTACATTAATTTATTAATT 73706 Query 142848 TGGACGCCATAGTCCATATGTCTGATGCGGTTTTCTTCAACGCCCTTGTTGTTCTTCAGA 142907 || || ||||| || | ||| | | ||| |||||||||| || ||| || || Sbjct 73707 TGTACCCCATAATCTAAATGGCGCACGCGATTTTCTTCAATACCACGGTTATTGCGTAGC 73766 Query 142908 ACGAGCAAATTTTCAACTTCCAAATGCCATAAAGGATAATAAGCAGTAGCAGCGCCGCCC 142967 || | || ||||| ||||| ||||||||||| |||||| | | || || || || || Sbjct 73767 ACCAATAAGTTTTCTACTTCTAAATGCCATAACGGATAAAATACCGTTGCCGCCCCCCCG 73826 Query 142968 CGGATTCCACCTTGTGAACAGGATTTAACAGCCGTTTGGAAATGTTTCCAGAACGGAATA 143027 || | || ||||| ||||||||||| ||||| |||||||| | || | || |||||| Sbjct 73827 CGTACCCCGCCTTGAGAACAGGATTTCACAGCTGTTTGGAAGTACTTATAAAATGGAATA 73886 Query 143028 ACACCAGTATG--ACGAACTTCACCCATACCGATTTTCGAA---CCTTCAGCACGAATCA 143082 ||||||||| ||| |||| || |||| ||| | ||| ||||| ||| Sbjct 73887 CAACCAGTATGGAACG--CTTCGCC---ACCGCGGATCGGACTTCCTAAGGCACGGATCT 73941 Query 143083 TACCAACGTTGATGCCGATACCCGCACGCTTACTGATA--TATTCGATGATTGAATTGGC 143140 |||| | || ||||| || || | ||| | ||||| |||| | || | | || Sbjct 73942 TACCGGCATTAATGCCAATTCCAG--CGCGTTGTGATACGTATTTAACAATAGCGCTCGC 73999 Query 143141 AGTCTTATTGATTGACTTCAGGGAGTCTGCAGCTTCGATAACCACGCAGGAACTGAACTG 143200 || ||| ||||| | || || | || || | || || ||||| ||||| Sbjct 74000 GGTGGCATTAATTGAGTCAAGACTATCATCGCACTCAATCAATACACACGAACTAAACTG 74059 Query 143201 CCGGGTAGGTGTTCTGGCGCCCGCCATGATAGGTGTGGGCAACGAAACCTGTCTTGTGGA 143260 || || || || | | |||||||| || || || || | |||| | ||||| Sbjct 74060 GCGAGTTGGAGTGCGCACCCCCGCCATAATTGGCGTAGGTAGGGAAATTTTAAAGGTGGA 74119 Query 143261 TACTGCATCATAAAAACGGCAAACGTGCTTCAGACG 143296 | |||||||||||||| || || || ||||| Sbjct 74120 AATCGCATCATAAAAACGTTTAATGTAATTGAGACG 74155 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548765065037640