Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_029000.1 Length=162327 Score E Sequences producing significant alignments: (Bits) Value seq1913 82.4 8e-11 >seq1913 Length=212763 Score = 82.4 bits (90), Expect = 8e-11 Identities = 230/340 (68%), Gaps = 11/340 (3%) Strand=Plus/Minus Query 40571 CCAAGATACCCACAAACTCTTCGTGTAACTGACATCTTTGCCG-AGTCGTGGTTACCACA 40629 |||| ||| ||||| || | || ||||| |||| |||| | | | ||||| |||||||| Sbjct 33502 CCAA-ATAGCCACATACACGACGAGTAACCGACA-CTTTACTGGAATCGTGATTACCACA 33445 Query 40630 GCTCGGACAACTAAATCCTTTCGAGGTGCATTTGAATTCACCGTCAAAACCACATTCATA 40689 || |||||| | || ||||| || || |||||||| | ||||||||||||| Sbjct 33444 ACTTGGACAAGTGAACCCTTTACTAGTACAAGAAAATTCACCACTATAACCACATTCATA 33385 Query 40690 ACATTTATCGACAGGCGTGTTTGTTCCAAAAT-AGGAAAGATTTTCCATCGC-GTAATCC 40747 ||| | ||| | ||| || || || ||| ||| ||||| | | || || |||||| Sbjct 33384 ACACTCATCAATAGGGGTATTCGTCCCATAATAAGGAACG--CGGCTATAGCTATAATCC 33327 Query 40748 CAAATTTGCTCAAGGGCCTCGAGATTGTTTCGCATATT-GGGTAGTTCGACATAGCTGAT 40806 || | | || | || | ||||| | ||||||| ||||| ||| |||| | ||| Sbjct 33326 CATACATCTTCTAACGCTTTAAGATTATGCTGCATATTAGGGTA-TTCACCATAACAGAT 33268 Query 40807 ATGCCCGCCTGATGCAATCCAATGGAATTCTTTTTCGGCATCTATTTTGTCATACGGGTT 40866 || || ||| ||| | | | ||||||| |||| ||| | ||| ||| | Sbjct 33267 GAAGCCACCATTTGCGATCATAGGATAGGCTTTTTCAAACTCTAATTTTTGATAAGGG-T 33209 Query 40867 CAAC-TCGGCATCAACAGGAATATGGAAGCTATTCGTATA 40905 |||| | || ||| | |||||| ||||||||||| Sbjct 33208 CAACTTTTTTCTCCACATCCAGATGGAAACTATTCGTATA 33169 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 519282313862680