Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_029003.2 Length=29733 Score E Sequences producing significant alignments: (Bits) Value seq916 123 5e-24 >seq916 Length=289624 Score = 123 bits (136), Expect = 5e-24 Identities = 527/821 (64%), Gaps = 25/821 (3%) Strand=Plus/Plus Query 14416 ATATCGTAAAAATTTCAGCCAGCGCGAGCTGATGGTTATCTGGCCTGATTTCCTCGCATG 14475 ||| ||||||||||| | |||||| | ||||| || ||||||||||| ||| | Sbjct 155469 ATACCGTAAAAATTTTGGTGCGCGCGAAGTTATGGTGATTTGGCCTGATTTTATCGGTTT 155528 Query 14476 GGACACAGTGAAAAATACCACCGCAACGGCTT---ACGCCACTGCGCGTGCACTCGGCCT 14532 || | | | || ||| || ||| ||| | || || || |||||| | || | Sbjct 155529 TGATA---TCACAATATCCAACGAAACTACTTTTTATGCTACCGCTCGTGCAGTTGGATT 155585 Query 14533 GCGTGCTTACATCGACCAGACTGTCGGCTGGCACAAAACCCTGTCTAACGTTGGTGTACA 14592 || ||| | || |||||| | || |||||||||||||| || || | ||| | Sbjct 155586 ACGCGCTAAAATTGACCAGCAAATTGGTTGGCACAAAACCCTATCAAATATGCCGGTAAA 155645 Query 14593 GGGAGTTACCGGCATCAGCGCCTCAGTGTTCTGGGATTTGCAGGCATCCGGCACCGATGC 14652 || || || || || || || | ||||||||| ||||| |||||||||| Sbjct 155646 TGGGGTAACGGGTATTAGTAAAGATGTTTACTGGGATTTACAGGCTGAAAGCACCGATGC 155705 Query 14653 TGACCTTCTCAACGAGGCCGGGGTTACAACTCTGGTACGCAAGGACGGTTTCCGCTTCTG 14712 | |||||| || | || ||||| || | | || | || || || Sbjct 155706 TAGTTATCTCAATGAAAATGAAGTAACAACATTGATTTGTCGTAGTGGATATCGTTTTTG 155765 Query 14713 GGGTAACCGCACCTGCTCAGATGACCCGCTTTTTCTGTTTGAGAACTACACCCGTACCGC 14772 |||| || || || | || || ||||| ||||||| |||||||| || || | Sbjct 155766 GGGTTCTCGTACTTGTACTGAAGATGGCTTTTTTATGTTTGAAAACTACACTCGAACAAC 155825 Query 14773 GCAGGTACTGGCCGACACGATGGCTGAAGCGCACATGTGGGCGGTC---GATAAGCCCAT 14829 || || ||||| ||| | || || || || ||||| | | ||||| || || Sbjct 155826 TCAAGTTCTGGCGGACTCAATCGCGGATGC---CATGTTTGATTTTATTGATAAACCGAT 155882 Query 14830 TACCGCCACGCTCATTCGTGACATTGTTGA--CGGCATCAATGCCAAATTCCGCGAGCTG 14887 |||| | | || ||||||||||| ||| | ||| ||| ||||| || ||| Sbjct 155883 GCACGCCTCATTAATCAAAGACATTGTTGAATCGG--TAAATAACAAGTTCCGAGAACTG 155940 Query 14888 AAAACAAACGGCTACATCGTGGACGGTGAATGCTGGTTCGACGAG-GAATCGAACGACAA 14946 ||| |||| ||||| ||| | || ||| || ||||| || | | |||| ||| ||| Sbjct 155941 AAATCAAATGGCTATATCATTGATGGTAAAGCGTGGTTTGATGCGTCAATC-AACACCAA 155999 Query 14947 GGAGACCCTGAAAGCCGGGAAACTGTATATCGACTACGACTATACGCCGGTTCCGCCACT 15006 ||| | |||| || || || | || || ||||| |||||||| ||||| || || Sbjct 156000 GGATCAACACAAAGAAGGCAAGCTAAAAATTGATTACGATTATACGCCTGTTCCACCTCT 156059 Query 15007 GGAGAGCATGACCATGCGCCAGCGTATCACCGATAAATATCTGGTGAATCTGGCCGAATC 15066 || | | | | ||||||||| || |||| ||| | || || | || | || Sbjct 156060 TGAAAATTTAATGTTTAACCAGCGTATTACTGATAGTTATTTAGTTGATTTAGCAAATTC 156119 Query 15067 GGT--CAACAGCTAAGGAGCCTGAAACAACATGGCACTACCCCGTAAACTCAAATACCTG 15124 || || || |||||| | ||| ||||||| ||||| ||| | ||||| | Sbjct 156120 AGTTGCAGCAAACTAGGAGCGTTTAAC-TCATGGCATTACCCAAAAAATTGAAATATTTT 156178 Query 15125 AATATGTTCAACGATG--GCCTCAGCTACATGGGTGTTGTTGAATCCGTAACGTTGCCGA 15182 || |||| | |||| || || ||| || |||| | | ||||| | || || || | Sbjct 156179 AACGTGTTTATTGATGGTGCTTC--CTATATTGGTGAAGCTAAATCCATCACATTACCTA 156236 Query 15183 AGCTGACCCGCAAGCTCGAAAACTATCGCGGCGGCGGTATG 15223 | || || | || | |||| |||||| || | |||||| Sbjct 156237 AACTTACACAAAAATTGGAAAGCTATCGTGGTGCTGGTATG 156277 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 95017727168810