Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_029009.1 Length=147589 Score E Sequences producing significant alignments: (Bits) Value seq1913 172 5e-38 >seq1913 Length=212763 Score = 172 bits (190), Expect = 5e-38 Identities = 501/761 (66%), Gaps = 33/761 (4%) Strand=Plus/Minus Query 38324 CGTTCTTCAAAAATTTCCCAGAAGACTTCTTTATCCCCTTCTGATTCAATAGCAATACGT 38383 |||| || || |||| |||||| | | ||| |||| || |||||| |||||||| Sbjct 32750 CGTTGATCCAATATTTTCCAGAATCGTGACTCATCACCTTTTGCTTCAATGGCAATACGA 32691 Query 38384 GGTAAGTTAAGGGTTACTACTCCTAAATTCATACGACCA----GAGTTTACTTCGTTTCC 38439 || | || | | | ||| |||||||| |||| ||| || ||| || | || Sbjct 32690 GGAATATTTAAACTAATTACCCCTAAATTATTACGCCCATCATGAATTTGCTGC----CC 32635 Query 38440 ATGTTCATCTTTCCATCCTTGTAAGAATGAACGACAACCCATAGGACATTTAAATGAACC 38499 || ||| || | ||| ||||| |||||| ||||| || ||||||||| || Sbjct 32634 ATCTTCTTCATAAACACCT---AAGAAACTACGACAGCCCATTGGGGTTTTAAATGATCC 32578 Query 38500 TGTTAGCTCAACAATTTTGTCATAGTTCAAAATATCAGGGTACATACGTTTAGCTGAACA 38559 ||||| || || | || ||||| || | |||||||| ||||| |||||||| | ||| Sbjct 32577 TGTTACCTTGACCACTTGATCATAATTAAGGATATCAGGATACATTCGTTTAGCGGCACA 32518 Query 38560 TTCTAATGCTAACTGTTTTACTTCATAGTTAGGGTCTTCTGGTTTACGGTTAACTCCGTC 38619 ||||||||||| ||||| | ||| || | ||| ||| ||| | ||||| || || Sbjct 32517 CTCTAATGCTAATTGTTTAATCGTATAATTTTGATCTGTTGGCTTATGATTAACCCCATC 32458 Query 38620 TTTAATAGTGAACAATAATTTAGGGAAGATTGCTGTACGTCCTTCTGTTCCTAGACCTTG 38679 ||| || | || | ||||||||| || | ||| || | | |||||| ||| Sbjct 32457 TTTGATCGCAAAGACTAATTTAGGAAAAACTGCCGTTTTATGATTTTTTCCTAAACCAAC 32398 Query 38680 GATACGTACTTTAAAAATAGCTTTTTGGATT---TCTCTTTCCCAACGTCCAGTACCTAA 38736 ||||| || || || | || ||| ||| | ||||||| | || ||||| Sbjct 32397 AATACGCACACGTAAGATCGATTCTTGAATTAAGCGTGATTCCCAA---CTGGTGCCTAA 32341 Query 38737 ACCAAAACCAATAGACGTGAAAGGGGTCTGACCATTCGATGTAAATAACGTATTGATTTC 38796 |||||| |||| | ||||||||||| ||||||| ||| || |||||||| ||| Sbjct 32340 ACCAAATCCAAATGTAACAAAAGGGGTCTGTCCATTCGCAGTATGTAGCGTATTGACTTC 32281 Query 38797 ATACTCTAGGCTTTGCATTGCATCGTAAATATCTTTGTTTGTTTTCTCGA--TTGCATAT 38854 ||| |||| ||| | |||||| ||| |||| ||| | | || | || || Sbjct 32280 ATATTCTAACGATTGAAATGCATCATAACACTCTT--TTTCAGTACGTGACTTAGCGTAG 32223 Query 38855 GTTTCTGGTTCGGGAATACGGTAACGTTTAGC-ATCCGCCATATGTTTTTGATAATTCAT 38913 |||| || ||||| | | || || || || | |||||||| |||| | | Sbjct 32222 TTTTCGATATCAGGAATTTGCCACTCTTCGGCTATACGAC-GATGTTTTTCATAA--CTT 32166 Query 38914 TTCGGCATAAGGT--GCTAATACTTCATCAATGCGGTCAAATGAACAACCCCCATA---C 38968 |||| | || | || | ||||||||||| || | || | || ||||| Sbjct 32165 TTCGATACAAATTTAGCCAGAACTTCATCAATACGATTAATGGTGGTGCCACCATAAATA 32106 Query 38969 TGACTGGAAGCCACATTCGCAATAATTTGTGCTGTTTGTGCTGTAGCTGTTTGAATGGAA 39028 || ||| || || | || ||||| ||||| ||| || || || ||| ||| || Sbjct 32105 TGGCTG---GCTACTTGGGCTATAATCTGTGCGGTTACAGCGGTGGCAGTTGAAATTGAT 32049 Query 39029 TGAGGTGAACCGATTTCTGCATTACCCATTTTAAACCCGTT 39069 | ||| | | ||||| ||||| ||||||||||| || || Sbjct 32048 TTAGGCGGTTCAATTTCAGCATTTCCCATTTTAAAACCCTT 32008 Score = 86.0 bits (94), Expect = 6e-12 Identities = 177/260 (68%), Gaps = 10/260 (4%) Strand=Plus/Minus Query 37654 AAACTCTCCATCAAAACCGCATTCATGACATTTATCAATTGGGGTGTTTGTTCCAAGATA 37713 ||| || ||| | |||| ||||||| ||| | |||||| ||||| || || ||| ||| Sbjct 33411 AAATTCACCACTATAACCACATTCATAACACTCATCAATAGGGGTATTCGTCCCATAATA 33352 Query 37714 ACCAACTTTATCGTAGCTGTAGTCCCAAACAGCTTCTAACGCCTTAAGGTTGTGAACTAG 37773 | ||| ||||| || ||||| ||| |||||||||| ||||| || || | Sbjct 33351 AGGAACGCGGCTATAGCTATAATCCCATACATCTTCTAACGCTTTAAGATTATGCTGCAT 33292 Query 37774 TTTAGGGTATTCTACATAATGGATAAAACCACC----GGAAGCATATTTTGGAAACTCTT 37829 ||||||||||| ||||| ||| || ||||| | | |||| ||| | ||| Sbjct 33291 ATTAGGGTATTCACCATAACAGATGAAGCCACCATTTGCGATCATA----GGATAGGCTT 33236 Query 37830 TTTCAAAATCAATCTTTTCAAAAGGTGTTGGAGCTTTGC-GAACATCATAGTGGAAGCTA 37888 ||||||| || | |||| | |||| || ||| | ||||| ||||| ||| Sbjct 33235 TTTCAAACTCTAATTTTTGATAAGG-GTCAACTTTTTTCTCCACATCCAGATGGAAACTA 33177 Query 37889 TTTGTATAATATTCTTTATC 37908 || ||||| || ||||||| Sbjct 33176 TTCGTATAGTAACCTTTATC 33157 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472123991004360