Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_029013.1 Length=177688 Score E Sequences producing significant alignments: (Bits) Value seq2372 181 1e-40 seq2331 167 3e-36 seq1913 118 1e-21 seq3883 98.7 1e-15 >seq2372 Length=84335 Score = 181 bits (200), Expect = 1e-40 Identities = 339/495 (68%), Gaps = 15/495 (3%) Strand=Plus/Plus Query 77095 AGAAAGCATCATACAGGCGATCATTTGCAACGTCAGGGCTGAACAGTGTGATGTAATCGT 77154 ||||||| ||||||| |||| || | |||||| ||||| | ||| | |||| Sbjct 73615 AGAAAGCCGCATACAG---ATCAGGGACATCAGAAGGGCTAAACAGCGAGATATTTTCGT 73671 Query 77155 TATTGATTAAACGCTTATACATCAAATCGTTAAGCTGAACGCCATAATCCAGGTGACGAA 77214 | || |||||||||| ||||| || | |||| || || |||||||| | || || | Sbjct 73672 TTTTAATTAAACGCTGGTACATTAATTTATTAATTTGTACCCCATAATCTAAATGGCGCA 73731 Query 77215 TACGGTTATTCTCAACACCTTTGTTGTTTTTCAGAACCAGCAGGTTTTCAACTTCCAAAT 77274 || || | |||| ||| ||| || || |||| | |||||| ||||| |||| Sbjct 73732 CGCGATTTTCTTCAATACCACGGTTATTGCGTAGCACCAATAAGTTTTCTACTTCTAAAT 73791 Query 77275 GCCAGATCGGATAATACAACGTTGCAGCACCACCACGAACGCCACCTTGTGAACAGGATT 77334 |||| | ||||||| | | |||||| || || || || || || ||||| |||||||||| Sbjct 73792 GCCATAACGGATAAAATACCGTTGCCGCCCCCCCGCGTACCCCGCCTTGAGAACAGGATT 73851 Query 77335 TAACCGCTGTCTGAATATGTTTCCAGAACGGGATCACGCCTGTATGTACTGCTTCACCAC 77394 | || ||||| || | | || | || || || || ||||| | ||||| |||| Sbjct 73852 TCACAGCTGTTTGGAAGTACTTATAAAATGGAATACAACCAGTATGGAACGCTTCGCCAC 73911 Query 77395 CACGGATTTTAGAACCCATTGCGCGAATGTGTCCAGCATTAACACCGATACCCGCGCGTT 77454 | ||||| | || | || || || | || ||||||| || || || ||||||| Sbjct 73912 CGCGGATCGGACTTCCTAAGGCACGGATCTTACCGGCATTAATGCCAATTCCAGCGCGTT 73971 Query 77455 GTGAAATATACTTCACGATCGC---AGAGGTTACAGCATTCAGAGAACCCAGTGAATCAC 77511 |||| | || || || || || | ||| ||||| | || | || |||| Sbjct 73972 GTGATACGTATTTAACAATAGCGCTCGCGGT---GGCATTAATTGAGTCAAGACTATCAT 74028 Query 77512 CTGATTCAATCACTACGC---AACTGGAAAACTGACGCGTAGGAGTACGCACACCCGCCA 77568 | | ||||||| ||| | |||| |||||| || || ||||| ||||| ||||||| Sbjct 74029 CGCACTCAATCAATACACACGAACT---AAACTGGCGAGTTGGAGTGCGCACCCCCGCCA 74085 Query 77569 TAATAGGCGTAGGTA 77583 |||| |||||||||| Sbjct 74086 TAATTGGCGTAGGTA 74100 Score = 100 bits (110), Expect = 3e-16 Identities = 226/336 (67%), Gaps = 8/336 (2%) Strand=Plus/Plus Query 75533 AATATGCGTATAACTGCGACTGTGAATTGTTTCACTGAAAGCCCATGTTTCGATCCACGT 75592 |||||||||||| ||| ||||| || ||| || | ||| ||||| | ||| || Sbjct 71965 AATATGCGTATAGGAGCGCGAATGAATAGTCTCAGAAAATGACCAAGTTTCTACCCATGT 72024 Query 75593 TTCCA-TTGAAACATCAGAGGCAATCGGGAGAAACGCCAGGTTAGGGCCGCGTCCCTGAA 75651 ||| | || | || ||| | || | || |||| || || | ||||| |||| Sbjct 72025 TTCTAATTCAGGGAT-AGAAATTAGAGGTAATAATGCCACATTTGGACTACGTCCTTGAA 72083 Query 75652 TGGTATCTAACAGGGTTTGATATTGCAGGTTAGAATCAAAAATGATTTTTTCGTGTTCCG 75711 ||| ||||| | ||||||||||| | ||| ||| || |||||| ||||| | Sbjct 72084 TGGAGTCTAATAAGGTTTGATATTTTAAATTACTGATAAAGATATGTTTTTCATGTTCAG 72143 Query 75712 GCATTTTTGCATACTGCATACGGTCTATCGACAGATCCACTTCTTCCGGTCGCCAGAAGA 75771 | | | ||| | ||||| ||| | | | |||||| ||||| || ||||| || | Sbjct 72144 GTAGCTGCTGATAATCAATACGATCTTTAGTAATATCCACCTCTTCTGGACGCCAAAAAA 72203 Query 75772 ATGACAGTTGTTTTTCAGTCAAAGTTTCGAATACGCGATGTTTTTGTTCTTCATATCGGG 75831 | || |||||||||||| |||| |||| || | || |||||| | ||||| || | Sbjct 72204 AGGAGAGTTGTTTTTCAATCAATTTTTCAAACATCTCATATTTTTGCTGATCATAGCGTG 72263 Query 75832 CAAC---CCCAGTATCTTCACCGAAGAACATTGGCT 75864 | || | ||| || ||| ||||||||||||| Sbjct 72264 CTACGTTCACAG---GTTGACCTAAGAACATTGGCT 72296 >seq2331 Length=68774 Score = 167 bits (184), Expect = 3e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 67743 TTACATGCTTTCCGTAAAGGTTCTGGCGATAACGTCGCGCTGTTGTTCTGGAGTCAGTGC 67802 ||| ||||| ||||| || | || |||||||| || ||||||||||| || | || Sbjct 23628 TTAAATGCTAGTTGTAAAAGTACGAGCAATAACGTCACGTTGTTGTTCTGGCGTTAATGA 23687 Query 67803 ATTAAAGCGAACTGCGTAACCTGAAACGCGGATCGTTAACTGTGGGTACTTCTCAGGATG 67862 |||||| || || || ||||| ||||| || || ||||| || ||||| || ||||| || Sbjct 23688 ATTAAAACGCACCGCATAACCAGAAACACGAATAGTTAATTGCGGGTAGTTTTCAGGGTG 23747 Query 67863 TTTCACAGCATCTTCCAGGGTTTCGCGACGTAGCACATTCACGTTTAGGTGCTGTCCACC 67922 ||| || || ||||| | ||||| ||||||| |||||||| |||| ||| |||||||| Sbjct 23748 TTTAACCGCGTCTTCTAACGTTTCACGACGTAATACATTCACATTTAAGTGTTGTCCACC 23807 Query 67923 TTCAACTTTAACAGTCGGTTGAAACTCAATATCAACTTCACGTTTTGCGA 67972 ||| ||||||| ||| ||| | |||||| |||||||| | | ||| Sbjct 23808 TTCTACTTTAATAGTTGGTGCGACATCAATAGGTACTTCACGATATTCGA 23857 >seq1913 Length=212763 Score = 118 bits (130), Expect = 1e-21 Identities = 364/543 (67%), Gaps = 20/543 (4%) Strand=Plus/Minus Query 141841 GTAACGAAAGGTGTTTGTCCGTTGGCAGTATGCAGCGTGTTAACTTCGTATTCATACGAT 141900 ||||| ||||| || ||||| || |||||||| ||||| || ||||| ||||| ||||| Sbjct 32327 GTAACAAAAGGGGTCTGTCCATTCGCAGTATGTAGCGTATTGACTTCATATTCTAACGAT 32268 Query 141901 TGGAAAGCATCA-AACACATCTTTTTCAGTCTTTTCCATCGCATA-TGTACGATCCAACG 141958 || || |||||| ||||| ||||||||||| | | | || || | | |||| | | Sbjct 32267 TGAAATGCATCATAACAC-TCTTTTTCAGTACGTGACTTAGCGTAGTTTTCGATATCA-G 32210 Query 141959 AAATTTTATACTTTTTAGC-ATCCTTAACATGCTTTTCATATGTCATTTC--TGCATACG 142015 ||||| ||| || || || | | ||| |||||||| | |||| | || | Sbjct 32209 GAATTTGCCACTCTTCGGCTATAC-GACGATGTTTTTCATA--ACTTTTCGATACAAATT 32153 Query 142016 GAGCCAGCACTTTATCA--ACGTTTGCAAAGGTTGTCCCGCCGTACTGGTGAGAAGCAAT 142073 |||||| |||| |||| ||| || || ||| || || || || || || | Sbjct 32152 TAGCCAGAACTTCATCAATACGATT--AATGGTGGTGCCACCATAAATATGGCTGGCTAC 32095 Query 142074 CTGTGCGGTGATCTGTGCCATAAGAGCAGTCGCAACACCGATTGATTTCGGGGGTTCGAT 142133 || || | |||||||| | | ||| || ||| |||||||| || ||||| || Sbjct 32094 TTGGGCTATAATCTGTGCGGTTACAGCGGTGGCAGTTGAAATTGATTTAGGCGGTTCAAT 32035 Query 142134 GTCTGCGTTACCCATCTTGAAGCCATTAGCCAGCATACCTTTCAAATCCACCAGACAGCA 142193 || || || ||||| || || || || | ||||| || | ||||| | || ||| Sbjct 32034 TTCAGCATTTCCCATTTTAAAACCCTTGGTTAGCATTCCATCTAAATCAATTAGCATGCA 31975 Query 142194 GTTTGTGTATGGCGTGAACGGG-CTGTAATCCAGATCATGATAGTGGATGTCGCCGGAGT 142252 | || || | | || ||| ||||||||||||||||| || || || || | Sbjct 31974 G-TTAAACATAGGGAAAAAGGGAGCATAATCCAGATCATGATAATGAATTTCACCACGAT 31916 Query 142253 CATGCGCTTCTACGATATGTTTCGGAAGGATATGATTAC-GGGCGAAATGCTTCGCTACA 142311 ||||||| || | ||| || | ||||| ||| | || |||| || || || Sbjct 31915 CATGCGCAATAGAAATTTCTTTAGGTAAGATAT-ATTGCTTAGCATAATGTTTAGCAACG 31857 Query 142312 ATACCCGCCAGCAAATCGCGCTGTGTCGGGAATACCCTTGC-GTCTTTGTTCGCGTTCTC 142370 ||||| || | ||||||||||| || |||||| | || | ||||| || || || || Sbjct 31856 ATACCTGCTAATAAATCGCGCTGAGT-AGGAATAACTTTACTATCTTTATTAGCATTTTC 31798 Query 142371 GTT 142373 ||| Sbjct 31797 GTT 31795 >seq3883 Length=158444 Score = 98.7 bits (108), Expect = 1e-15 Identities = 140/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 67733 TCAATAGACATTACATGCTTTCCGTAAAGGTTCTGGCGATAACGTCGCGCTGTTGTTCTG 67792 |||| || ||||||| || ||||| || | | || ||||| ||||| ||| Sbjct 116573 TCAACAGTTATTACATTGATTGAGTAAACGTCCGAGTAATGACGTCTTTTTGTTGCTCTT 116514 Query 67793 GAGTCAGTGCATTAAAGCGAACTGCGTAACCTGAAACGCGGATCGTTAACTGTGGGTACT 67852 ||| | | ||||| || || || ||||| ||||| || || ||||| ||||| |||| Sbjct 116513 TAGTTAAAGAGTTAAAACGTACGGCATAACCAGAAACACGAATAGTTAATTGTGGATACT 116454 Query 67853 TCTCAGGATGTTTCACAGCATCTTCCAGGGTTTCGCGACGTAGCACATTCACGTTTAGGT 67912 | ||||||| || || |||||| | ||||| ||| || || || || || |||| Sbjct 116453 TTTCAGGATTTTCCATTGCATCTAATAATGTTTCACGATTTAATACGTTAACATTAAGGT 116394 Query 67913 GCTGTCCACCTTCAACT 67929 |||| |||||||||||| Sbjct 116393 GCTGACCACCTTCAACT 116377 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 568434098190720