Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_029042.1 Length=156833 Score E Sequences producing significant alignments: (Bits) Value seq916 98.7 1e-15 seq2372 89.7 5e-13 >seq916 Length=289624 Score = 98.7 bits (108), Expect = 1e-15 Identities = 70/79 (89%), Gaps = 1/79 (1%) Strand=Plus/Plus Query 19438 TTTAGTGGTGACCCTGGCTGGACTTGAACCAGCGACCAATCGATTATGAGTCGACTGCTC 19497 || ||||||| ||| ||||||||||||||| ||||||||||||||||||||||||||| Sbjct 161541 TTAAGTGGTGGCCCCTACTGGACTTGAACCAGTGACCAATCGATTATGAGTCGACTGCTC 161600 Query 19498 TAACC-ACTGAGCTACGGG 19515 | ||| ||||||||| ||| Sbjct 161601 TGACCAACTGAGCTAAGGG 161619 >seq2372 Length=84335 Score = 89.7 bits (98), Expect = 5e-13 Identities = 266/406 (66%), Gaps = 11/406 (3%) Strand=Plus/Minus Query 102612 CTTCCAACACCTATTATGTCCGGCGTCCGCACCCCGACCCGACAGTTCAGCTCTTGTGTA 102671 || || || || |||||| | || || ||||| || || || ||||| || || |||||| Sbjct 74101 CTACCTACGCCAATTATGGCGGGGGTGCGCACTCCAACTCGCCAGTTTAGTTCGTGTGTA 74042 Query 102672 TTGA-TCAAACTGGTGACACATTGGACTCAATTAATGCCACTGCGAAAAGCATCGTGGAT 102730 |||| | | | ||| | | ||||||||||||||||| |||| || || | Sbjct 74041 TTGATTGAGTGCGATGATAGTCTTGACTCAATTAATGCCACCGCGAGCGCTATTGTTAAA 73982 Query 102731 TATGTTTCCAAACGTGCTGGCATCGGATTCGATGTTGGGGCAATTCGTGGCATTGGTAGC 102790 || || || |||| ||||| || || | ||| || || |||| | | || || Sbjct 73981 TACGTATCACAACGCGCTGGAATTGGCATTAATGCCGGTAAGATCCGTGCCTTAGGAAGT 73922 Query 102791 CCTATCCGTAAAGGGGAAATGGTCCATACAGGTCTGGTTCCATTCATCAAGTATTT---G 102847 || ||||| || ||| | ||||||| ||| ||||||| ||||| || Sbjct 73921 CCGATCCGCGGTGGCGAAGCGTTCCATACTGGTTGTATTCCATTTTATAAGTACTTCCAA 73862 Query 102848 ACTGGTGCCCTGAAGTCTTGCTCTCAAGGCGGTATCCGTGGTGGATCGGCAACATGCTAT 102907 || | || |||| || || ||||||||||| | || || || ||||||| | ||| Sbjct 73861 ACAGCTG---TGAAATCCTGTTCTCAAGGCGGGGTACGCGGGGGGGCGGCAAC--GGTAT 73807 Query 102908 GT--TCCCATCTGGCATTATCAATTTGATGATGTCGTTGTTCTCAAAAACAACCGTGGAT 102965 | ||| | ||||||| || | || | | | || || || |||||||| Sbjct 73806 TTTATCCGTTATGGCATTTAGAAGTAGAAAACTTATTGGTGCTACGCAATAACCGTGGTA 73747 Query 102966 TGGAAGAGAACCGTGAACGCCGTATCGACTATGGGATTCAGATTAA 103011 | ||||| || || | |||| | | || |||||| | || ||||| Sbjct 73746 TTGAAGAAAATCGCGTGCGCCATTTAGATTATGGGGTACAAATTAA 73701 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 501702735508520