Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_029073.1 Length=141298 Score E Sequences producing significant alignments: (Bits) Value seq911 304 1e-77 >seq911 Length=74078 Score = 304 bits (336), Expect = 1e-77 Identities = 539/786 (69%), Gaps = 0/786 (0%) Strand=Plus/Plus Query 48700 CCTTTTAATACTTGAATAGCCTCTTTGACTTCATTTGCATTTCCCACTTCATATCCTAAT 48759 |||||||| | ||| || ||||| ||||| || || ||||| |||| ||||| Sbjct 39603 CCTTTTAAGGTATCAATTGCTTCTTTCACTTCTAACGCGTTACCCACAGCATAACCTAAA 39662 Query 48760 GGCTGATTCATATCTGTAATGACTGCAATTGTTTTTCGATTCAGATTTTTTCCAATATCA 48819 || || |||||| | || | || || || || | ||| | ||||| | Sbjct 39663 GGTTGTGACATATCAGAGATAATCGCCATGGTACGACGGCCGACATTATGACCAATTTTT 39722 Query 48820 ACCATTTCTTGTGCTAATGCTTTAGAGTCTTCTAATGTTTTCATAAATGCTCCATTTCCT 48879 ||||| | || ||||| ||| | || || |||||||||||| || || || Sbjct 39723 ACCATCGCATGGGCTAACTCTTCCGCTTCCGCTTGTGTTTTCATAAACGCACCGGCACCG 39782 Query 48880 GTTTTAACATCTAATACAATTGCATCTGCTCCCATTGCGAtttttttACTCATAATGCTA 48939 ||||| || |||| ||||| ||||| || || || ||||||||||||||||| | Sbjct 39783 GTTTTCACGTCTAGCACAATCGCATCCGCGCCAGCAGCAATTTTTTTACTCATAATTGAA 39842 Query 48940 CTAGCAATTAATGGAATTGAATTAACTGTTCCAGTAACATCGCGTAATGCATATAATTTT 48999 || |||||||||||||| || || || || | || ||||| |||| |||||| | |||| Sbjct 39843 CTGGCAATTAATGGAATAGAGTTTACCGTCGCCGTGACATCACGTAGTGCATAAAGTTTT 39902 Query 49000 TTGTCGGCAGGCACTAAAATTCCACTTTGTCCAACTAATGCGATTTTATGTGTATTAACT 49059 || || || ||| ||||| | |||||||| |||| | ||| | ||||| |||||| Sbjct 39903 TTATCCGCTGGCGCTAAATTACCACTTTGACCAATAATTGCCACTTTATCGCGGTTAACT 39962 Query 49060 TGATTAATAAATTGTTCTCTTGTTAATTCTACGTTAAAGCCTTGTATAGATTCTAATTTG 49119 || | ||||| | || | | ||| || ||||| || | || | ||| ||||| Sbjct 39963 TGTTGGATAAAATCCTCAATATCGATTTCAACTTTAAACCCAGGAATGGTTTCAAATTTA 40022 Query 49120 TCAATTGTTCCTCCTGTGTGCCCTAAACCTCTACCTGACATTTTAGCAACAGGAATACCC 49179 ||||| || || || || || |||||||| | || |||||| || || || | | || Sbjct 40023 TCAATCGTACCACCCGTATGACCTAAACCACGCCCACTCATTTTTGCTACGGGGACATCC 40082 Query 49180 AAAGAAGCAACCAATGGAGCAACGATTAAACTAATTTTATCGCCGACTCCACCTGTGGAA 49239 || | ||| || ||||| |||| | ||| | | ||||||| || |||||||| ||| Sbjct 40083 AACGCAGCGACTAATGGTGCAAGCACTAAGGTTGTCGTATCGCCCACGCCACCTGTTGAA 40142 Query 49240 TGTTTATCTACTTTTACACCTTCGATTTTTGATAGGTCAATTGTTTCACCAGAATTAATC 49299 |||||||| ||||| | || || || |||||| |||| || ||||||||||||| | Sbjct 40143 TGTTTATCGACTTTAATTCCCTCAATCGCTGATAGATCAACCGTCTCACCAGAATTAACC 40202 Query 49300 ATGGCATTAGTTAAGGCAGAGATTTCTTCTTTAGACATGCCATTGAAATAAATTGCCATT 49359 || || | ||||| | | | ||| || | ||| | |||||||| |||||| Sbjct 40203 ATCGCCATCGTTAAATCTGCGCGTTCGCGTTCGGTCATATTCTGAAAATAAATGGCCATT 40262 Query 49360 AACATAGAAGCCATTTGATAATCAGGAATGTCGCCGTTCGTGTAACCGCGGATGATAAAA 49419 || | || | |||||| |||||||| | || | || || | | ||| Sbjct 40263 AAAAAAGCACTGGCTTGATAGTCAGGAATATGTCCATCTGTATATTGTTTAACAAAAAAC 40322 Query 49420 TCAATTTCTTCTTTTGAAAGCTCATAACCATCCCGTTTTTTCGCAATTAAATCGACCATT 49479 ||||||||| | ||| | || | |||||| |||||||| ||||| | ||| |||||| Sbjct 40323 TCAATTTCTGCGGTTGTTAATTCGTGACCATCACGTTTTTTTGCAATAATATCCACCATT 40382 Query 49480 CTCATG 49485 |||||| Sbjct 40383 CTCATG 40388 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451994189871120