Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_029091.1 Length=168771 Score E Sequences producing significant alignments: (Bits) Value seq2372 147 2e-30 seq1913 127 2e-24 seq2331 114 1e-20 seq3883 89.7 6e-13 >seq2372 Length=84335 Score = 147 bits (162), Expect = 2e-30 Identities = 306/450 (68%), Gaps = 12/450 (3%) Strand=Plus/Minus Query 41867 ATTATTCGTTTTTATGATGCCGTTTCTACTCATCAAGTTTCATTGCCAACCCCAATTATG 41926 |||| |||||||||||||| |||| || | || |||| | || || ||||||||| Sbjct 74143 ATTAAACGTTTTTATGATGCGATTTCCACCTTTAAAATTTCCCTACCTACGCCAATTATG 74084 Query 41927 GCAGGTGCTCGTACTCCGACTCGCCAGTTCTCTAGTT---GTGTAGTTATTGAAGCCGGT 41983 || || | || ||||| ||||||||||| ||||| ||||| | ||||| || | Sbjct 74083 GCGGGGGTGCGCACTCCAACTCGCCAGTT---TAGTTCGTGTGTATTGATTGAGTGCGAT 74027 Query 41984 GATTCGTTAAAATCTATTAACAAAACTTC-AGCATCAATTATTGAATATATTTCTAAACG 42042 ||| | | || ||||| || | ||| | ||| || |||| | || |||| Sbjct 74026 GATAGTCTTGACTCAATTAATGCCACCGCGAGCG-CTATTGTTAAATACGTATCACAACG 73968 Query 42043 AGCTGGTATCGGTATCAACGTTGGTATGCTTCGTGCAGAAGGTTCTAAGATCGGTATGGG 42102 ||||| || || || || | |||| | | ||||| ||| | |||| | || Sbjct 73967 CGCTGGAATTGGCATTAATGCCGGTAAGATCCGTGCCTTAGGAAGTCCGATCCGCGGTGG 73908 Query 42103 TGAAG--TTCGACATACGGGTGTTATTCCATTCTGGAAACATTTCCAAACTGCAGTAAAA 42160 |||| ||| ||||| ||| ||||||||| | || | |||||||| || || ||| Sbjct 73907 CGAAGCGTTC--CATACTGGTTGTATTCCATTTTATAAGTACTTCCAAACAGCTGTGAAA 73850 Query 42161 TCTTGTTCTCAAGGTGGTATTCGTGGTGGTGCTGCTACAGCGTATTATCCGATGTGGCAC 42220 || ||||||||||| || | || || || || || || | | ||||||| | ||||| Sbjct 73849 TCCTGTTCTCAAGGCGGGGTACGCGGGGGGGCGGCAACGGTATTTTATCCGTTATGGCAT 73790 Query 42221 TTAGAAGTAGAGAACCTATTAGTTCTGAAAAATAACAAAGGCGTGGATGAAAACCGTATT 42280 ||||||||||| ||| |||| || || |||||| || | || ||||| || | Sbjct 73789 TTAGAAGTAGAAAACTTATTGGTGCTACGCAATAACCGTGGTATTGAAGAAAATCGCGTG 73730 Query 42281 CGACATATGGACTACGGAATTCAGATTAAT 42310 || ||| | || || || | || |||||| Sbjct 73729 CGCCATTTAGATTATGGGGTACAAATTAAT 73700 Score = 127 bits (140), Expect = 2e-24 Identities = 366/547 (67%), Gaps = 27/547 (5%) Strand=Plus/Minus Query 44212 GCGTGAGCTAATGAAATCTCTTTACCTCTGTTTGCATGTTATT-AATGCCTTAGAAGCTA 44270 |||||| ||| |||| ||||| |||||||| ||| | ||||| | ||||||| Sbjct 71782 GCGTGAATTAAAGAAAAAACTTTATCTCTGTTTA-ATGAGCGTCAATGCGCTTGAAGCTA 71724 Query 44271 TTCGTTTTTATG-TATCTTTCGCATGCACCTTTAACTTCCACAAGAATATGGAAATCATG 44329 |||| ||||||| || |||| || ||| | ||| ||| | ||| ||| | ||| Sbjct 71723 TTCGATTTTATGTTAGCTTT-GCCTGCTCGTTTGCCTTTGCC--GAA-CGCGAATTAATG 71668 Query 44330 GAAGGTAATGCCAAGATTATGAAGTTCATTGCTCGTGATGAACAGCTCCACCTCAAGGGC 44389 ||||| |||||||| ||||| || | ||||| || |||||| || ||||| | || Sbjct 71667 GAAGGAAATGCCAAAATTATTAAACTGATTGCCCGCGATGAAGCTCTTCACCTTACCGGT 71608 Query 44390 ACTCAATATATTATTCGTGCTTTACAAGATGGCGAAGACGGTGATGAATGGGTCAAAATT 44449 ||||||| ||| ||| | | |||| ||| ||||| | | ||| || | || Sbjct 71607 ACTCAATTTATGATTAATACGTTACGCAGTGGTGAAGATGATCCAGAAATGGCTGATATC 71548 Query 44450 GCTCAAGAGTGTGAACAAGAAGCAGT----TGATATTTTCATGGAAGTTAACGCTCAAGA 44505 ||| ||||||| ||||| |||| |||| | || | ||| |||||| Sbjct 71547 GCTAAAGAGTGCCAACAA----CAGTGCTATGATCTGTTTGTCCAAGCAGCAAATCAAGA 71492 Query 44506 AAAAGAATGGGCTGAACACTTGTTTAAAGATGGTGCTCTTCCAGGTCTAAATGTTAAAAT 44565 ||||| ||||| || || ||||| || || | | ||||||||| | || Sbjct 71491 GAAAGATTGGGCGGATTACCTGTTTTCAGGCGGATCAATGATCGGTCTAAATCGAGATAT 71432 Query 44566 CCTAAGTGAATTTGTGGATTATCTTACC-GTGTCTCGTATGCGTAGTTGTGGTC-TGCCA 44623 | | || ||| | | || ||| ||||| | || ||||||| || |||| | | || Sbjct 71431 CTTGTGTCAATATATTGAATATATTACCAATATC-CGTATGC-AAGCAGTGGGCTTACCC 71374 Query 44624 TGTCCTCTT-AAAGACGTATCAACTCGTCATCCTATTCCATGGATTCGTGAGTATTTGAA 44682 | ||| || | ||| ||| | ||||||||||||||||| | | | ||| Sbjct 71373 TTACCTTTTGCGACACG------CTC-TAATCCTATTCCATGGATTAATAATTGGTTGGT 71321 Query 44683 CTCTGATTTGGTTCAAGCAGCCCCACAAGAAGTTGAAATCAGTTCTTATCTTGTCGCACA 44742 ||| ||| ||||||| |||||||||||| |||||||| |||||| | |||| || Sbjct 71320 CTCAGATAACGTTCAAGTCGCCCCACAAGAATCAGAAATCAGCTCTTATTTAGTCGGTCA 71261 Query 44743 AATTGAT 44749 ||||||| Sbjct 71260 AATTGAT 71254 >seq1913 Length=212763 Score = 127 bits (140), Expect = 2e-24 Identities = 618/966 (64%), Gaps = 32/966 (3%) Strand=Plus/Plus Query 138804 GAAATTGAAGGATTGATTCATAAAACTAATAAAGACCTTTTAAACGAGAATGCTAATAAA 138863 || ||| |||| || ||| | ||| ||||| | |||| ||||| |||||||||||| Sbjct 31753 GAGATTAAAGGGTTAATTGAACAAAGTAATATGGCAATTTTGAACGAAAATGCTAATAAA 31812 Query 138864 GATTCTCGTGTTTTTCCAACTCAACGGGACCTTATGGCTGGTATTGTGTCTAAACACATT 138923 ||| | ||| |||| ||||| || || | | || ||||| || ||||||| | Sbjct 31813 GATAGTAAAGTTATTCCTACTCAGCGCGATTTATTAGCAGGTATCGTTGCTAAACATTAT 31872 Query 138924 GCCAA---AAATATGGTCCCGTCTTTTATTATGAAAGCACATGAAAGCGGAATTATCCAT 138980 || || | |||| | || ||| | || ||||| | || || ||| Sbjct 31873 GCTAAGCAATATATCTTACCTAAAGAAATTTCTATTGCGCATGATCGTGGTGAAATTCAT 31932 Query 138981 TTCCACGATATTGATTATTC-CCCTGCTCTTCCGTTTACT-AATTGCTGTTTAGTCGATT 139038 | || ||| | |||||| | |||| | |||| | | | || ||| || | |||| Sbjct 31933 TATCATGATCTGGATTATGCTCCCT--TTTTCCCTATGTTTAACTGCATGCTAATTGATT 31990 Query 139039 TAAAGGGGATGCTTGAGAACGGATTTAAATTAGGCAATGCTCAAATTGAAACGCCTAAAT 139098 || | || ||||| || || |||||| | || |||||| |||||||| ||||||||| Sbjct 31991 TAGATGGAATGCTAACCAAGGGTTTTAAAATGGGAAATGCTGAAATTGAACCGCCTAAAT 32050 Query 139099 CTATTGGCGTTGCTACTGCAATTATGGCACAAATTACTGCNNAAGTTGCTTCCCATCAAT 139158 | ||| ||| || || | | ||||| |||| || |||| || |||| | Sbjct 32051 CAATTTCAACTGCCACCGCTGTAACCGCACAGATTATAGCCCAAGTAGCCAGCCATATTT 32110 Query 139159 ACGGCGGAACGACTTTTGCTAATGTAGATAAAGTACTTTCTCCTTATGTTAAACGCACC- 139217 | || || || || || | | | ||| |||| || || | ||| | || | Sbjct 32111 ATGGTGGCACCACCATTAATCGTATTGATGAAGTTCTGGCTAAATTTGT--ATCGAAAAG 32168 Query 139218 -TATGCAAAACATATTGAGGAT-GCAGAAAAATGGCAAATCGCTGATGCGTTAAATTATG 139275 |||| ||||||| | | || || ||| | |||||||| ||||| ||| || | Sbjct 32169 TTATGAAAAACATCGTC-GTATAGCCGAAGAGTGGCAAATTCCTGATATCGAAAACTACG 32227 Query 139276 CTCAATCTAAAACAGAAAAAGACGTATACGATGCATTCCAAGCTTATGAATATGAAGTAA 139335 || | || || |||||||| || |||||||| ||| | | ||||||||||| | Sbjct 32228 CTAAGTCACGTACTGAAAAAGAGTGTTATGATGCATTTCAATCGTTAGAATATGAAGTCA 32287 Query 139336 ATACTCTCTTTAGTTCAAACGGACAAACGCCTTTTGTAACAATTACATTTGGTACGGGAA 139395 |||| || || | | || ||||| || |||||||| ||| || ||||||| || | Sbjct 32288 ATACGCTACATACTGCGAATGGACAGACCCCTTTTGTTACATTTGGATTTGGTTTAGGCA 32347 Query 139396 CTGACTGGACTGAACGAATGATTCAGAAAGCAATTCTGAAAAAT-CGTATTAAAGGTCTT 139454 | ||| ||| | ||||| || | | ||| | | |||||| ||| | Sbjct 32348 CCAGTTGGGAATCACGCTTAATTCAAGAATCGA-TCTTACGTGTGCGTATTGTTGGTTTA 32406 Query 139455 GGTCGTGATGGGATAACTCCTATTTTTCCTAAACTTGTTATGTTCG-TTGAAGAAGGTGT 139513 || || | ||| | ||||||||||| || | | | || | |||| || || Sbjct 32407 GGAAAAAATCATAAAACGGCAGTTTTTCCTAAA-TTAGTCTTTGCGATCAAAGATGGGGT 32465 Query 139514 TAATCTTTATAAAGACGATCCGAACTATGATATTAAGCAGCTTGCGTTAGAATGTGCAAG 139573 ||||| | | | |||| || ||| ||||| || | || ||||| ||||| Sbjct 32466 TAATCATAAGCCAACAGATCAAAATTATACGATTAAACAATTAGCATTAGAGTGTGCCGC 32525 Query 139574 CAAAAGAATGTATCCTGA---CATTATTTCGGTTAAGAATAATAAAGCTATCACCGGCTC 139630 ||| ||||||||||||| | ||| || | | | | | | ||| || || || || Sbjct 32526 TAAACGAATGTATCCTGATATCCTTAATTATGATCA-AGTGGTCAAGGTA--ACAGGATC 32582 Query 139631 ATCTATTCCTGTTTCTCCAATGGGTTGTCGTAGTTTCTTGAGTGCATGGAAAGATTCAAC 139690 || || | |||||||| |||||||||||||| ||| | |||| | Sbjct 32583 ATTTA------AAACCCCAATGGGCTGTCGTAGTTTCTTAGGTGTTTATGAAGA---AGA 32633 Query 139691 TGGAAATGAAATTCTTGACGGTCGTAATAATCTTGGCGTTGTAACACTGAATCTTCCTCG 139750 ||| | |||||| ||| || ||||||||| | || || | | | ||| ||||||| Sbjct 32634 TGGGCAGCAAATTCATGATGGGCGTAATAATTTAGGGGTAATTAGTTTAAATATTCCTCG 32693 Query 139751 TATAGC 139756 ||| || Sbjct 32694 TATTGC 32699 >seq2331 Length=68774 Score = 114 bits (126), Expect = 1e-20 Identities = 122/161 (76%), Gaps = 0/161 (0%) Strand=Plus/Minus Query 123123 CAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATCCA 123182 ||||| | || || || || | ||||||||||| ||||||| || ||||| || || Sbjct 23801 CAACACTTAAATGTGAATGTATTACGTCGTGAAACGTTAGAAGACGCGGTTAAACACCCT 23742 Query 123183 GAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTCTG 123242 ||||| || ||||| | || || ||||| ||||||||||| || || ||||| || | Sbjct 23741 GAAAACTACCCGCAATTAACTATTCGTGTTTCTGGTTATGCGGTGCGTTTTAATTCATTA 23682 Query 123243 ACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTTTAC 123283 || || ||||| || || |||||||| ||||| || ||||| Sbjct 23681 ACGCCAGAACAACAACGTGACGTTATTGCTCGTACTTTTAC 23641 >seq3883 Length=158444 Score = 89.7 bits (98), Expect = 6e-13 Identities = 118/164 (72%), Gaps = 0/164 (0%) Strand=Plus/Plus Query 123121 GTCAACATCTGAACGTTAACGTTCTGCGTCGTGAAACTCTAGAAGATGCAGTTAAGCATC 123180 |||| || || || |||||||| | ||||||||| || ||||||| | | ||| Sbjct 116388 GTCAGCACCTTAATGTTAACGTATTAAATCGTGAAACATTATTAGATGCAATGGAAAATC 116447 Query 123181 CAGAAAAATATCCGCAGCTGACCATCCGTGTATCTGGTTATGCAGTTCGCTTTAACTCTC 123240 | ||||| ||||| || | || || ||||| ||||||||||| || || ||||||||| Sbjct 116448 CTGAAAAGTATCCACAATTAACTATTCGTGTTTCTGGTTATGCCGTACGTTTTAACTCTT 116507 Query 123241 TGACTCCGGAACAGCAGCGCGACGTTATCGCTCGCACCTTTACT 123284 | ||| || || || ||||| || |||| || |||||| Sbjct 116508 TAACTAAAGAGCAACAAAAAGACGTCATTACTCGGACGTTTACT 116551 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 539901680974840