Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_029119.1 Length=127726 Score E Sequences producing significant alignments: (Bits) Value seq911 86.0 5e-12 >seq911 Length=74078 Score = 86.0 bits (94), Expect = 5e-12 Identities = 251/384 (65%), Gaps = 2/384 (1%) Strand=Plus/Plus Query 126057 AATTGTGTATGTATTGCATCCATATGATTGGAATAAATATGTGCATCTCCAAATGTATGA 126116 |||||| |||| || |||||||| |||| ||||| ||| | ||| ||| || | Sbjct 46824 AATTGTAAATGTGTTTGTTCCATATGGTTGGCATAAAGATGGGTATCACCACCAGTCCAA 46883 Query 126117 ATGAATTCACCCACCTCAAGTCCACATTCTTTTGCAACAAGATGTGTCAGTAAAGCATAA 126176 | || || || ||| | | |||||| | || | | |||| | ||||| || Sbjct 46884 ACAAAATCGCCTACCGCCAAATCACATTGCTGCGCTATCATATGTACTAACAAAGCGTAG 46943 Query 126177 CTTGCAATATTGAAAGGAACACCTAAAAATATATCAGCACTT-CTTTGATATAATTGACA 126235 || |||||||| ||||| | |||||||| | ||| ||| | ||||| | || || Sbjct 46944 CTAGCAATATTAAAAGGTAGGCCTAAAAACACATC-GCATGAACGCTGATAAAGCTGGCA 47002 Query 126236 ATTTAATTTACCCTCTTGTACGTAAAATTGAAACATTGTGTGGCAAGGTGGTAATGCCAT 126295 | | ||| || || || ||||| || || | | |||||| || | || ||||| Sbjct 47003 AGACAGTTTGCCGTCCGCCACATAAAACTGGAAGAAAGCGTGGCATGGCGCCAAAGCCAT 47062 Query 126296 TGAATCGATTTCAGTAGGATTCCATGCTGAAACAATGTGACGTCGAGAGTTTGGATTGGT 126355 |||| || |||||| ||||| || || ||| || || | ||||| || Sbjct 47063 CTGCTCGAGCTCTCCGACATTCCAAGCTGATACGATTAAACGACGTGAATCGGGATTAGT 47122 Query 126356 TTTAATTTGTTGTATAACTGATTTTAATTGATCGTAATGATTTCCATTTTTATCTTCCCA 126415 ||| ||||||| || || | | ||||||| || || |||| ||| ||| Sbjct 47123 TTTGATTTGTTCAATCACCTCACTAATTTGATCGCGTTGCTTACCATCCGCTGCTTGCCA 47182 Query 126416 ATCTCTCCATTGTTTACCATAAAC 126439 | | | |||||||||||||||||| Sbjct 47183 AGCACGCCATTGTTTACCATAAAC 47206 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408570717330713