Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq503 93.3 3e-14 seq129 86.0 4e-12 >seq503 Length=216272 Score = 93.3 bits (102), Expect = 3e-14 Identities = 159/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| ||||| || ||||| || ||| ||| ||| |||| || ||| || Sbjct 160881 ATGCAAATTTTCGTGAAGACCCTTACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 160940 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | ||||| | ||| || ||| |||||| || || ||||| ||||| || | Sbjct 160941 GACACGATAGAAAAT--GTAAAAGCAAAAATTCAAGATAAGGAAGGAATTCCGCCAGATC 160998 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || | || |||||||| || |||||| |||| || | ||||| | || ||||||| Sbjct 160999 AACAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGACGCACACTATCAGATTACA 161058 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || || ||| | || | ||| | ||| | ||||| || Sbjct 161059 ACATTCAGAAGGAATCAACTCTCCACCTTGTTCTTCGTCTTCGTGGTGG 161107 Score = 86.0 bits (94), Expect = 4e-12 Identities = 136/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||||||||| ||||| || ||||| || ||| ||| ||| |||| || ||| || Sbjct 162092 ATGCAAATTTTCGTGAAGACCCTTACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 162151 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || |||| | ||| || ||| |||||| ||||||||||| |||| || | Sbjct 162152 GATACGATAGAAAAT--GTAAAAGCAAAAATTCAAGACAAAGAAGGAATTCCTCCAGACC 162209 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | ||| | || || ||||| ||||| ||| | || || | |||| | || ||||||| Sbjct 162210 AACAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGCACACTCTCTGATTACA 162269 Query 27968 ACATCCAAAAAGA 27980 | || ||||| || Sbjct 162270 ATATACAAAAGGA 162282 >seq129 Length=1828789 Score = 86.0 bits (94), Expect = 4e-12 Identities = 137/195 (70%), Gaps = 4/195 (2%) Strand=Plus/Plus Query 27787 AAAATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAA--A 27844 || ||||| || |||||||||||| | ||||| ||| || || |||| || ||| | Sbjct 1158593 AAGATGCAGATATTTGTGAAAACTTTGACTGGTAAAACCATCACCCTTGAAGTAGAAGCA 1158652 Query 27845 GCACCGACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGG 27904 || || || | ||| || ||| ||||| || |||||||| |||| | Sbjct 1158653 TCAGATACTATTGAAAAT--GTAAAAGCTAAAATCCAGGATAAAGAAGGAATTCCACCTG 1158710 Query 27905 AGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATT 27964 | |||||||| | |||||||| ||||| |||||||| || | ||| | |||| |||| Sbjct 1158711 ATCAGCAACGTCTTATTTTTGCTGGAAAGCAATTGGAAGATGGACGTACTCTGTCAGATT 1158770 Query 27965 ACAACATCCAAAAAG 27979 | || || ||||||| Sbjct 1158771 ATAATATTCAAAAAG 1158785 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355838290211193