Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_029692.1 Length=362276 Score E Sequences producing significant alignments: (Bits) Value seq739 165 2e-35 seq503 141 2e-28 seq129 127 5e-24 >seq739 Length=1399493 Score = 165 bits (182), Expect = 2e-35 Identities = 171/224 (76%), Gaps = 0/224 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | || | || || ||||||||||| || ||||||||||| | ||| || Sbjct 7024 CGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTT 6965 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||| ||||| ||||| || ||||| | || || ||||| ||||||| ||| Sbjct 6964 CTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCT 6905 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| |||||||| |||||| || || || |||||||| |||||| || ||| Sbjct 6904 TCTTTGTCTTGGATCTTAGCTTTCACATTCTCTATTGTGTCAGAAGCTTCAACTTCAAGA 6845 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATTTT 211117 || || || || || || | ||||| || || | |||||| || Sbjct 6844 GTAATAGTTTTCCCTGTTAAGGTCTTAACGAAGATCTGCATGTT 6801 Score = 165 bits (182), Expect = 2e-35 Identities = 172/226 (76%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||||||||| | || | || || ||||||||||| |||||||||||||| | ||| Sbjct 8198 TCCACGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAG 8139 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || ||||||||||| ||||| ||||| || ||||| | || || ||||| ||||||| Sbjct 8138 AGTTCTTCCATCTTCTAGCTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAAT 8079 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || || |||||||| || || || || || || || |||||||| |||||| || Sbjct 8078 ACCCTCTTTGTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTC 8019 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | ||||| || ||||| || || || |||||||| | ||||||| Sbjct 8018 CAAGGTGATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCATT 7973 Score = 150 bits (166), Expect = 4e-31 Identities = 169/226 (75%), Gaps = 0/226 (0%) Strand=Plus/Minus Query 210890 TCAACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAG 210949 || ||||||||| | || | || || ||||||||||| |||||||||||||| | ||| Sbjct 7940 TCCACGAAGTCTCAATACTAAATGGAGTGTGGACTCTTTCTGGATGTTATAATCTGAAAG 7881 Query 210950 GGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAAC 211009 || ||||||||||| || || ||||| || ||||| | || || ||||| ||||||| Sbjct 7880 AGTTCTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAAT 7821 Query 211010 TCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTC 211069 || || ||||| |||||||| ||||| || || || |||||||| ||| || || Sbjct 7820 ACCCTCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTC 7761 Query 211070 GAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | || || || || || || || || || ||||| | ||||||| Sbjct 7760 CAAGGTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCATT 7715 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | || | || || ||||||||||| || ||||||||||| | ||| || Sbjct 7252 CGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTT 7193 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||| || || ||||| || ||||| | || || ||||| ||||||| || Sbjct 7192 CTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCC 7133 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || |||||||| || || || || || || || |||||||| |||||| || | Sbjct 7132 TCTTTGTCCTGAATTTTAGCCTTAACATTCTCTATTGTGTCAGATGCTTCAACTTCCAAG 7073 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || ||||| || || || |||||||| | ||||||| Sbjct 7072 GTAATGGTTTTTCCAGTAAGTGTTTTTACAAAGATCTGCATT 7031 Score = 149 bits (164), Expect = 1e-30 Identities = 166/222 (75%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | || | || || ||||||||||| |||||||||||||| | ||| || Sbjct 7708 CGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGGATGTTATAATCTGAAAGAGTT 7649 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||| || || ||||| || ||||| | || || ||||| ||||||| || Sbjct 7648 CTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCC 7589 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| |||||||| ||||| || || || |||||||| ||| || || | Sbjct 7588 TCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAG 7529 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || || || || || || ||||| | ||||||| Sbjct 7528 GTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCATT 7487 Score = 143 bits (158), Expect = 6e-29 Identities = 165/222 (74%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210894 CGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTC 210953 |||||||| | || | || || ||||||||||| || ||||||||||| | ||| || Sbjct 7480 CGAAGTCTCAATACTAAATGGAGCGTGGACTCTTTCTGAATGTTATAATCTGAAAGAGTT 7421 Query 210954 CTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCCT 211013 ||||||||||| || || ||||| || ||||| | || || ||||| ||||||| || Sbjct 7420 CTTCCATCTTCTAGTTGTTTGCCAGCAAAGATCAAACGCTGCTGGTCTGGAGGAATACCC 7361 Query 211014 TCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGA 211073 || ||||| |||||||| ||||| || || || |||||||| ||| || || | Sbjct 7360 TCTTTGTCTTGGATCTTAGCCTTCACATTCTCTATTGTGTCAGAAGCTTCTACTTCCAAG 7301 Query 211074 GTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 || || || || || || || || || ||||| | ||||||| Sbjct 7300 GTAATGGTTTTACCAGTAAGTGTTTTGACAAAGATCTGCATT 7259 >seq503 Length=216272 Score = 141 bits (156), Expect = 2e-28 Identities = 165/223 (74%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || |||||||||||||| || |||||||| || ||||| || | || || Sbjct 161857 ACGAAGGCGAAGAACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAGTCTGACAGCGT 161798 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| ||||||| || || || |||||||| | | ||||| || || |||| || Sbjct 161797 GCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCTGGCGGAATACC 161738 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || ||||| ||||| || || ||||| || ||||| || ||||| || || Sbjct 161737 TTCTTTATCCTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGAAGCCTCAACTTCCAG 161678 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| ||||| ||||| || || || |||||||| | |||||| Sbjct 161677 AGTTATCGTTTTTCCTGTAAGGGTTTTTACAAAAATTTGCATT 161635 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || |||||||| ||||| || || || || ||||| ||||| | || || Sbjct 161102 ACGAAGACGAAGAACAAGGTGGAGAGTTGATTCCTTCTGAATGTTGTAATCTGATAGTGT 161043 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | |||||||||||| || || || || || || | | ||||| || || |||| ||| Sbjct 161042 GCGTCCATCTTCCAGTTGTTTACCCGCAAAAATCAATCTCTGTTGATCTGGCGGAATTCC 160983 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 |||||| || || || ||| ||| || ||||| || ||||| || |||||| || || Sbjct 160982 TTCCTTATCTTGAATTTTTGCTTTTACATTTTCTATCGTGTCGGAAGCTTCAACTTCAAG 160923 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||||| || ||||| || || ||||| || || | ||||| Sbjct 160922 TGTGATAGTTTTTCCTGTAAGGGTCTTCACGAAAATTTGCAT 160881 Score = 134 bits (148), Expect = 3e-26 Identities = 163/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || |||||||||||||| || |||||||| || ||||| || | || || Sbjct 162085 ACGAAGGCGAAGAACAAGGTGAAGAGTCGATTCTTTTTGAATATTATAGTCTGACAGCGT 162026 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| ||||||| || || || |||||||| | | ||||| || || |||| || Sbjct 162025 GCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCTGGCGGAATACC 161966 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || ||||| ||||| || || ||||| || ||||| || ||||| || || Sbjct 161965 TTCTTTATCCTGAATCTTGGCCTTAACATTTTCAATAGTGTCTGAAGCCTCAACTTCTAG 161906 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCAT 211114 ||| ||||| ||||| || || ||||| || || | ||||| Sbjct 161905 AGTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCAT 161864 Score = 132 bits (146), Expect = 1e-25 Identities = 163/223 (73%), Gaps = 0/223 (0%) Strand=Plus/Minus Query 210893 ACGAAGTCTTAGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGT 210952 |||||| | || |||||||||||||| || || ||||| || ||||| || | || || Sbjct 160874 ACGAAGGCGAAGAACAAGGTGAAGAGTCGATTCCTTTTGAATATTATAGTCTGACAGCGT 160815 Query 210953 CCTTCCATCTTCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTTGGTCAGGAGGAACTCC 211012 | ||| ||||||| || || || |||||||| | | ||||| || || |||| || Sbjct 160814 GCGTCCGTCTTCCAATTGTTTACCAGCGAAGATCAATCTCTGTTGATCGGGTGGAATACC 160755 Query 211013 TTCCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAG 211072 ||| || ||||| ||||| || || ||||| || ||||| || ||||| || || Sbjct 160754 TTCTTTATCCTGAATCTTGGCCTTGACATTTTCAATAGTGTCTGATGCCTCAACTTCTAG 160695 Query 211073 AGTGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 ||| ||||| ||||| || || ||||| || || | |||||| Sbjct 160694 AGTTATCGTTTTTCCTGTAAGGGTCTTGACGAAAATTTGCATT 160652 Score = 104 bits (114), Expect = 5e-17 Identities = 155/221 (70%), Gaps = 8/221 (4%) Strand=Plus/Minus Query 210903 AGGACAAGGTGAAGAGTGGACTCTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCT 210962 || |||||||||||||| || || || || || || ||||| | || || | ||||||| Sbjct 162539 AGAACAAGGTGAAGAGTCGATTCCTTCTGAATATTGTAATCTGATAGTGTGCGTCCATCT 162480 Query 210963 TCCAGCTGCTTGCCTGCGAAGATAAGGCGTTGTT--------GGTCAGGAGGAACTCCTT 211014 ||||| || || || || || || | | |||| | || || |||| |||| Sbjct 162479 TCCAGTTGTTTACCCGCAAAAATCAATCTCTGTTGATCCGGCGATCTGGCGGAATACCTT 162420 Query 211015 CCTTGTCCTGGATCTTTTGTTTCACGTTTTCGATGGTGTCAGAGCTTTCAACCTCGAGAG 211074 | || ||||| ||||| || || |||||||| ||||| || || || || |||| Sbjct 162419 CTTTATCCTGAATCTTGGCCTTGACATTTTCGATAGTGTCTGAAGCCTCCACTTCTAGAG 162360 Query 211075 TGATCGTCTTTCCCGTGAGAGTCTTTACAAACACCTGCATT 211115 | ||||| || || || || || |||||||| | |||||| Sbjct 162359 TTATCGTTTTCCCAGTAAGGGTTTTTACAAAAATTTGCATT 162319 >seq129 Length=1828789 Score = 127 bits (140), Expect = 5e-24 Identities = 144/193 (75%), Gaps = 0/193 (0%) Strand=Plus/Minus Query 210925 CTTTTTGGATGTTATAATCCGCAAGGGTCCTTCCATCTTCCAGCTGCTTGCCTGCGAAGA 210984 ||||||| || |||||||| | || || | ||||||||||| ||||| || || || | Sbjct 1158785 CTTTTTGAATATTATAATCTGACAGAGTACGTCCATCTTCCAATTGCTTTCCAGCAAAAA 1158726 Query 210985 TAAGGCGTTGTTGGTCAGGAGGAACTCCTTCCTTGTCCTGGATCTTTTGTTTCACGTTTT 211044 |||| ||||| || ||||| |||| |||||| || |||||||| || ||| || |||| Sbjct 1158725 TAAGACGTTGCTGATCAGGTGGAATTCCTTCTTTATCCTGGATTTTAGCTTTTACATTTT 1158666 Query 211045 CGATGGTGTCAGAGCTTTCAACCTCGAGAGTGATCGTCTTTCCCGTGAGAGTCTTTACAA 211104 | || || || || ||| || || || ||||| || || || || | ||| || |||| Sbjct 1158665 CAATAGTATCTGATGCTTCTACTTCAAGGGTGATGGTTTTACCAGTCAAAGTTTTCACAA 1158606 Query 211105 ACACCTGCATTTT 211117 | | |||||| || Sbjct 1158605 ATATCTGCATCTT 1158593 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1159069439761035