Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Bombus_20impatiens_20[refseq_20GCF_5F000188095.1_202011-09-22] 5,559 sequences; 249,185,056 total letters Query= NC_029997.1 Length=105667 Score E Sequences producing significant alignments: (Bits) Value seq739 147 1e-30 seq503 143 2e-29 seq2682 118 7e-22 seq647 86.0 4e-12 >seq739 Length=1399493 Score = 147 bits (162), Expect = 1e-30 Identities = 172/230 (75%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || ||||| || || |||||||| ||||| | |||||||| | | Sbjct 7973 AATGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATCACCTTGGAAGTTGAAGCATC 8032 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| |||| | |||| || |||||||| ||| | || ||||| | Sbjct 8033 TGACACAATAGAGAATGTTAAGGCTAAAA-TTCAGGACAAAGAGGGTATTCCTCCAGACC 8091 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||||| || ||||| |||||||| || ||||| | | | ||| | ||||| | Sbjct 8092 AGCAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTTTCAGATTATA 8151 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || |||||||||||| | |||||||| || || | || |||||| Sbjct 8152 ACATCCAGAAAGAGTCCACACTCCATTTAGTATTGAGACTTCGTGGAGGA 8201 Score = 141 bits (156), Expect = 6e-29 Identities = 172/232 (74%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 23608 AAAATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCC 23667 || |||||||| |||||||| ||| | || || ||||| || ||||| |||||||| | Sbjct 6801 AACATGCAGATCTTCGTTAAGACCTTAACAGGGAAAACTATTACTCTTGAAGTTGAAGCT 6860 Query 23668 ACGGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGA 23726 | ||||| | || ||| | ||| | || | | |||||||||||| | || ||||| Sbjct 6861 TCTGACACAATAGAGAATGTGAAAGCTAAGA-TCCAAGACAAAGAAGGTATTCCTCCAGA 6919 Query 23727 TCAACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTA 23786 || |||||||| || ||||| |||||||| || ||||| | | | ||| | ||||| Sbjct 6920 CCAGCAGCGTTTGATCTTTGCTGGCAAACAGCTAGAAGATGGAAGAACTCTTTCAGATTA 6979 Query 23787 CAACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 ||||| || ||||||||||| | |||||||| || || | || |||||| Sbjct 6980 TAACATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGA 7031 Score = 141 bits (156), Expect = 6e-29 Identities = 171/230 (74%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || ||||| || || |||||||| || || | |||||||| | | Sbjct 7031 AATGCAGATCTTTGTAAAAACACTTACTGGAAAAACCATTACCTTGGAAGTTGAAGCATC 7090 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| |||| | |||| || |||||||| ||| | || ||||| | Sbjct 7091 TGACACAATAGAGAATGTTAAGGCTAAAA-TTCAGGACAAAGAGGGTATTCCTCCAGACC 7149 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||||| || ||||| ||||||||||| ||||| | | | ||| | ||||| | Sbjct 7150 AGCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATA 7209 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || ||||||||||| | |||||||| || || | || |||||| Sbjct 7210 ACATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGA 7259 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || ||||| || || || ||||| || || | ||||| || | | Sbjct 7715 AATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTC 7774 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || | || | | |||||||| ||| | || ||||| | Sbjct 7775 TGACACAATAGAGAATGTGAAGGCTAAGA-TCCAAGACAAAGAGGGTATTCCTCCAGACC 7833 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||||| || ||||| ||||||||||| ||||| | | | ||| | ||||| | Sbjct 7834 AGCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATA 7893 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || |||||||||||| | |||||||| || || | || |||||| Sbjct 7894 ACATCCAGAAAGAGTCCACACTCCATTTAGTATTGAGACTTCGTGGAGGA 7943 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || ||||| || || || ||||| || || | ||||| || | | Sbjct 7259 AATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTC 7318 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || | || | | |||||||| ||| | || ||||| | Sbjct 7319 TGACACAATAGAGAATGTGAAGGCTAAGA-TCCAAGACAAAGAGGGTATTCCTCCAGACC 7377 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||||| || ||||| ||||||||||| ||||| | | | ||| | ||||| | Sbjct 7378 AGCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATA 7437 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || ||||||||||| | |||||||| || || | || |||||| Sbjct 7438 ACATTCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGA 7487 Score = 120 bits (132), Expect = 2e-22 Identities = 166/230 (72%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 ||||||||| || || ||||| || || || ||||| || || | ||||| || | | Sbjct 7487 AATGCAGATCTTTGTCAAAACACTTACTGGTAAAACCATTACCTTGGAAGTAGAAGCTTC 7546 Query 23670 GGACACTGTTGA-AATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC 23728 ||||| | || ||| | || | || | | |||||||| ||| | || ||||| | Sbjct 7547 TGACACAATAGAGAATGTGAAGGCTAAGA-TCCAAGACAAAGAGGGTATTCCTCCAGACC 7605 Query 23729 AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACA 23788 | |||||||| || ||||| ||||||||||| ||||| | | | ||| | ||||| | Sbjct 7606 AGCAGCGTTTGATCTTTGCTGGCAAACAACTAGAAGATGGAAGAACTCTTTCAGATTATA 7665 Query 23789 ACATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||| || ||||||||||| | |||||||| || || | || |||||| Sbjct 7666 ACATCCAGAAAGAGTCCACGCTCCATTTAGTATTGAGACTTCGCGGAGGA 7715 >seq503 Length=216272 Score = 143 bits (158), Expect = 2e-29 Identities = 150/197 (76%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||||| || |||||||| ||||| || |||||||| | | Sbjct 160881 ATGCAAATTTTCGTGAAGACCCTTACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 160940 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 ||||| | |||| ||||| ||||||| || || ||||| | |||||||||||| Sbjct 160941 GACACGATAGAAAATGTAAAAGCAAAAATTCAAGATAAGGAAGGAATTCCGCCAGATCAA 161000 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | || || ||||| || |||||||||||||| | |||||| || ||||||||| Sbjct 161001 CAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGACGCACACTATCAGATTACAAC 161060 Query 23791 ATACAAAAAGAGTCCAC 23807 || || || || || || Sbjct 161061 ATTCAGAAGGAATCAAC 161077 Score = 138 bits (152), Expect = 8e-28 Identities = 151/198 (76%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||||| || ||||||||||| ||||| |||||||| | | Sbjct 161864 ATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCTTCA 161923 Query 23671 GACACTGTTG-AAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| ||| |||| |||| | || ||| || ||||||||| | ||||||||||| Sbjct 161924 GACACTATTGAAAATGTTAAGGC-CAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCA 161982 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || || || || |||||| ||||||||| |||||| | || || || Sbjct 161983 ACAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAA 162042 Query 23790 CATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 162043 TATTCAAAAAGAATCGAC 162060 Score = 136 bits (150), Expect = 3e-27 Identities = 149/198 (75%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || |||||||| || ||||||||||| ||||| |||||||| | | Sbjct 161635 AATGCAAATTTTTGTAAAAACCCTTACAGGAAAAACGATAACTCTGGAAGTTGAGGCTTC 161694 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | || || ||| || ||||||||| | ||||||||||| Sbjct 161695 AGACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCA 161754 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || || || || |||||| ||||||||| |||||| | || || || Sbjct 161755 ACAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAA 161814 Query 23790 CATACAAAAAGAGTCCAC 23807 || |||||||| || || Sbjct 161815 TATTCAAAAAGAATCGAC 161832 Score = 123 bits (136), Expect = 2e-23 Identities = 146/198 (74%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| |||||||| || ||||| || ||||||||||| ||||| |||||||| | | Sbjct 160652 AATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCATC 160711 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCA 23729 |||||| |||||| | || || ||| || ||||||||| | || || ||||| Sbjct 160712 AGACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCA 160771 Query 23730 ACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAA 23789 |||| | || || || || || |||||| ||||||||| |||||| | || || || Sbjct 160772 ACAGAGATTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAA 160831 Query 23790 CATACAAAAAGAGTCCAC 23807 || ||||| || || || Sbjct 160832 TATTCAAAAGGAATCGAC 160849 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||||| || |||||||| ||||| || |||||||| | | Sbjct 162092 ATGCAAATTTTCGTGAAGACCCTTACAGGAAAAACTATCACACTTGAAGTTGAAGCTTCC 162151 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 || || | |||| ||||| ||||||| ||||||||||| | || ||||| ||| Sbjct 162152 GATACGATAGAAAATGTAAAAGCAAAAATTCAAGACAAAGAAGGAATTCCTCCAGACCAA 162211 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 || | || || ||||| || || ||||| ||||| | ||||| | |||||||| Sbjct 162212 CAAAGATTGATCTTTGCTGGAAAGCAACTTGAAGATGGGCGCACACTCTCTGATTACAAT 162271 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 |||||||| || || || | ||| | || | | || |||||||| Sbjct 162272 ATACAAAAGGAATCAACCCTGCATCTTGTACTTCGTCTGAGAGGAGGA 162319 Score = 113 bits (124), Expect = 3e-20 Identities = 148/206 (72%), Gaps = 8/206 (4%) Strand=Plus/Plus Query 23610 AATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCAC 23669 |||||| ||||| || |||||||| || || |||||||| ||||| ||||| || | | Sbjct 162319 AATGCAAATTTTTGTAAAAACCCTTACTGGGAAAACGATAACTCTAGAAGTGGAGGCTTC 162378 Query 23670 GGACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATC- 23728 |||||| | |||| | || || ||| || ||||||||| | |||||||||| Sbjct 162379 AGACACTATCGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCGCCAGATCG 162438 Query 23729 -------AACAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGC 23781 ||||| | || || ||||| || |||||||||||||| | |||||| || Sbjct 162439 CCGGATCAACAGAGATTGATTTTTGCGGGTAAACAACTGGAAGATGGACGCACACTATCA 162498 Query 23782 GATTACAACATACAAAAAGAGTCCAC 23807 |||||||| || || || || || || Sbjct 162499 GATTACAATATTCAGAAGGAATCGAC 162524 >seq2682 Length=416 Score = 118 bits (130), Expect = 7e-22 Identities = 163/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 23611 ATGCAGATTTTCGTTAAAACCCTCACGGGAAAAACGATCACTCTCGAAGTTGACTCCACG 23670 ||||| |||||||| || ||||| || ||||||||||| ||||| |||||||| | | Sbjct 320 ATGCAAATTTTCGTCAAGACCCTTACAGGAAAAACGATAACTCTAGAAGTTGAGGCTTCA 261 Query 23671 GACACTGTTGAAATATTAAAACAAAAAATTGCTGACAAAGAAGGTGTACCGCCAGATCAA 23730 |||||| |||||| | || || ||| || ||||||||| | || || |||||| Sbjct 260 GACACTATTGAAAATGTCAAGGCCAAGATTCAGGATAAAGAAGGTATTCCACCCGATCAA 201 Query 23731 CAGCGTTTAATATTTGCCGGCAAACAACTGGAAGACGAACGCACTTTAGGCGATTACAAC 23790 ||| | | || || || || |||||| ||||||||| |||||| | || || || Sbjct 200 CAGAGAGTGATCTTCGCTGGTAAACAATTGGAAGACGGACGCACGCTGTCAGACTATAAT 141 Query 23791 ATACAAAAAGAGTCCACATTACATTTAGTTTTAAGGTTGCGAGGAGGA 23838 || ||||| || || || | ||| | ||| | | | |||||||| Sbjct 140 ATTCAAAAGGAATCGACTCTTCATCTTGTTCTTCGTCTCAGAGGAGGA 93 >seq647 Length=2209093 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/200 (70%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 32826 ACATAATCTTTTCCTTTAATCAATTTTACGTATTGACAATTGGGAAACCAACGAGCGTGC 32885 |||||||||| |||| | | | ||| || || || | |||||| |||||| Sbjct 1060954 ACATAATCTTGCCCTTGCACGATTAATACATAACAGCATTTAGAAAACCACTTAGCGTGT 1061013 Query 32886 ATATGCCAAGGGTCGTCATCAGTTTCCCAATCTTTCAAACCGCCGTCGCAGTAAAAACAC 32945 | |||||| || || || | |||||||||||||||||| || | |||| ||||| Sbjct 1061014 TGCTCCCAAGGATCATCTTCTGGTTCCCAATCTTTCAAACCACCTCCACAGTGGTAACAC 1061073 Query 32946 ACAACTTTGTCGCCTCTTCCGCTATaaaaaaaaCCCGCTTCTGCTAATTGTGTGGGTTTC 33005 | || ||| ||| | || |||||||||| || || || ||||||||| | | Sbjct 1061074 AAGGTTTGGTCACCTTTCCCAGTATAAAAAAAGCCTGCATCGGCTAATTGTTCTTTTGTT 1061133 Query 33006 TGTTGCAAAGATTTTGGCCA 33025 ||| ||| |||||| ||||| Sbjct 1061134 TGTGGCATAGATTTAGGCCA 1061153 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 337986699743972